Keresztury Gábor, Holly Sándor, Komlósi Viktória, István Krisztina, Lóránd Tamás
Chemical Research Center, Hungarian Academy of Sciences, H-1525 Budapest, Hungary.
J Biochem Biophys Methods. 2006 Nov 30;69(1-2):163-77. doi: 10.1016/j.jbbm.2006.03.004. Epub 2006 Mar 31.
A combined experimental and theoretical approach is presented to structural characterization of fairly large, newly synthesized organic molecules in order to enhance the effectiveness of their instrumental analysis by vibrational spectroscopy. The method consists of measurement of FT-IR and Raman spectra of the reaction products and subsequent ab initio or DFT quantum mechanical calculations (prediction) of the vibrational spectra for any anticipated structural varieties of the synthesized molecules. Comparison of the measured and computed frequencies as well as the observed and simulated spectra is performed to resolve any uncertainties in identifying the reaction products. Vibrational frequency and normal mode calculations based on scaled quantum mechanical (SQM) force fields performed at the DFT/B3LYP/6-31G* level of theory are demonstrated to provide a wealth of information that have been used in this work to ascertain the molecular structure, probable conformation and H-bond properties of three new isochromanone or coumarin derivatives, namely: 3-([2'-hydroxymethyl]-phenyl)-coumarin (1), E-4-(3'-hydroxyphenylmethylene)-3-isochromanone (2), and 2-[(2'-hydroxymethyl)phenyl]-3H-naphto[2,1-b]pyran-3-one (3).
本文提出了一种结合实验与理论的方法,用于对相当大的新合成有机分子进行结构表征,以提高通过振动光谱对其进行仪器分析的有效性。该方法包括测量反应产物的傅里叶变换红外光谱(FT-IR)和拉曼光谱,以及随后对合成分子的任何预期结构变体进行从头算或密度泛函理论(DFT)量子力学计算(预测)振动光谱。通过比较测量频率与计算频率以及观察光谱与模拟光谱,来解决鉴定反应产物时的任何不确定性。结果表明,基于在DFT/B3LYP/6-31G*理论水平上进行的标度量子力学(SQM)力场的振动频率和简正模式计算,能够提供丰富的信息,在本工作中已利用这些信息确定了三种新的异色满酮或香豆素衍生物的分子结构、可能的构象和氢键性质,这三种衍生物分别为:3-([2'-羟甲基]-苯基)-香豆素(1)、E-4-(3'-羟基苯基亚甲基)-3-异色满酮(2)和2-[(2'-羟甲基)苯基]-3H-萘并[2,1-b]吡喃-3-酮(3)。