Uppsten Malin, Färnegårdh Mathias, Domkin Vladimir, Uhlin Ulla
Department of Molecular Biology, Swedish University of Agricultural Sciences, Uppsala Biomedical Center, Box 590, SE-751 24 Uppsala, Sweden.
J Mol Biol. 2006 Jun 2;359(2):365-77. doi: 10.1016/j.jmb.2006.03.035. Epub 2006 Mar 31.
Ribonucleotide reductase is an indispensable enzyme for all cells, since it catalyses the biosynthesis of the precursors necessary for both building and repairing DNA. The ribonucleotide reductase class I enzymes, present in all mammals as well as in many prokaryotes and DNA viruses, are composed mostly of two homodimeric proteins, R1 and R2. The reaction involves long-range radical transfer between the two proteins. Here, we present the first crystal structure of a ribonucleotide reductase R1/R2 holocomplex. The biological relevance of this complex is based on the binding of the R2 C terminus in the hydrophobic cleft of R1, an interaction proven to be crucial for enzyme activity, and by the fact that all conserved amino acid residues in R2 are facing the R1 active sites. We suggest that the asymmetric R1/R2 complex observed in the 4A crystal structure of Salmonella typhimurium ribonucleotide reductase represents an intermediate stage in the reaction cycle, and at the moment of reaction the homodimers transiently form a tight symmetric complex.
核糖核苷酸还原酶是所有细胞不可或缺的一种酶,因为它催化DNA构建和修复所需前体的生物合成。I类核糖核苷酸还原酶存在于所有哺乳动物以及许多原核生物和DNA病毒中,主要由两种同型二聚体蛋白R1和R2组成。该反应涉及两种蛋白质之间的长程自由基转移。在此,我们展示了核糖核苷酸还原酶R1/R2全复合物的首个晶体结构。该复合物的生物学相关性基于R2 C末端在R1疏水裂隙中的结合,这一相互作用已被证明对酶活性至关重要,还基于R2中所有保守氨基酸残基都面向R1活性位点这一事实。我们认为,在鼠伤寒沙门氏菌核糖核苷酸还原酶4Å晶体结构中观察到 的不对称R1/R2复合物代表反应循环中的一个中间阶段,并且在反应瞬间,同型二聚体短暂形成紧密的对称复合物。