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与抗生物素蛋白结合的(+)-表生物素的高分辨率结构。

The high-resolution structure of (+)-epi-biotin bound to streptavidin.

作者信息

Le Trong Isolde, Aubert Dimitri G L, Thomas Neil R, Stenkamp Ronald E

机构信息

Departments of Biological Structure and Biochemistry, Biomolecular Structure Center, University of Washington, Seattle, WA 98195, USA.

出版信息

Acta Crystallogr D Biol Crystallogr. 2006 Jun;62(Pt 6):576-81. doi: 10.1107/S0907444906011887. Epub 2006 May 12.

Abstract

(+)-Epi-biotin differs from (+)-biotin in the configuration of the chiral center at atom C2. This could lead to a difference in the mode of binding of (+)-epi-biotin to streptavidin, a natural protein receptor for (+)-biotin. Diffraction data were collected to a maximum of 0.85 Angstrom resolution for structural analysis of the complex of streptavidin with a sample of (+)-epi-biotin and refinement was carried out at both 1.0 and 0.85 Angstrom resolution. The structure determination shows a superposition of two ligands in the binding site, (+)-biotin and (+)-epi-biotin. The molecules overlap in the model for the complex except for the position of S1 in the tetrahydrothiophene ring. Differences in the conformation of the ring permits binding of each molecule to streptavidin with little observable difference in the protein structures at this high resolution.

摘要

(+)-表生物素在C2原子手性中心的构型上与(+)-生物素不同。这可能导致(+)-表生物素与链霉亲和素(一种天然的(+)-生物素蛋白受体)的结合模式存在差异。收集了最高分辨率为0.85埃的衍射数据,用于链霉亲和素与(+)-表生物素样品复合物的结构分析,并在1.0和0.85埃分辨率下进行了精修。结构测定表明,结合位点中有两种配体(+)-生物素和(+)-表生物素叠加。除了四氢噻吩环中S1的位置外,复合物模型中的分子相互重叠。环构象的差异使得每个分子都能与链霉亲和素结合,在这种高分辨率下,蛋白质结构几乎没有明显差异。

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