Gu Jian, Iyer Vishwanath R
Section of Molecular Genetics and Microbiology, Institute for Cellular and Molecular Biology, Center for Systems and Synthetic Biology, University of Texas at Austin, 1 University Station A4800, Austin, TX 78712-0159, USA.
Genome Biol. 2006;7(5):R42. doi: 10.1186/gb-2006-7-5-r42. Epub 2006 May 31.
Serum treatment of quiescent human dermal fibroblasts induces proliferation, coupled with a complex physiological response that is indicative of their normal role in wound-healing. However, it is not known to what extent such complex transcriptional events are specific to a given cell type and signal, and how these global changes are coordinately regulated. We have profiled the global transcriptional program of human fibroblasts from two different tissue sources to distinct growth stimuli, and identified a striking conservation in their gene-expression signatures.
We found that the wound-healing program of gene expression was not specific to the response of dermal fibroblasts to serum but was regulated more broadly. However, there were specific differences among different stimuli with regard to signaling pathways that mediate these transcriptional programs. Our data suggest that the PI3-kinase pathway is differentially involved in mediating the responses of cells to serum as compared with individual peptide growth factors. Expression profiling indicated that let7 and other miRNAs with similar expression profiles may be involved in regulating the transcriptional program in response to proliferative signals.
This study provides insights into how different stimuli use distinct as well as conserved signaling and regulatory mechanisms to mediate genome-wide transcriptional reprogramming during cell proliferation. Our results indicate that conservation of transcriptional programs and their regulation among different cell types may be much broader than previously appreciated.
血清处理静止的人皮肤成纤维细胞可诱导其增殖,并伴随着复杂的生理反应,这表明它们在伤口愈合中发挥正常作用。然而,尚不清楚这种复杂的转录事件在多大程度上特定于给定的细胞类型和信号,以及这些全局变化是如何协同调节的。我们对来自两种不同组织来源的人成纤维细胞针对不同生长刺激的全局转录程序进行了分析,并在它们的基因表达特征中发现了显著的保守性。
我们发现伤口愈合基因表达程序并非皮肤成纤维细胞对血清反应所特有,而是受到更广泛的调节。然而,在介导这些转录程序的信号通路方面,不同刺激之间存在特定差异。我们的数据表明,与单个肽生长因子相比,PI3激酶途径在介导细胞对血清的反应中发挥不同作用。表达谱分析表明,let7和其他具有相似表达谱的微小RNA可能参与调节对增殖信号的转录程序。
本研究深入探讨了不同刺激如何利用不同以及保守的信号传导和调节机制来介导细胞增殖过程中的全基因组转录重编程。我们的结果表明,不同细胞类型之间转录程序及其调节的保守性可能比以前认识到的要广泛得多。