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反硝化佐贝尔氏菌属新属、新种以及台湾佐贝尔氏菌新种,能够进行发酵代谢的反硝化细菌。

Zobellella denitrificans gen. nov., sp. nov. and Zobellella taiwanensis sp. nov., denitrifying bacteria capable of fermentative metabolism.

作者信息

Lin Yu-Te, Shieh Wung Yang

机构信息

Institute of Oceanography, National Taiwan University, PO Box 23-13, Taipei, Taiwan.

出版信息

Int J Syst Evol Microbiol. 2006 Jun;56(Pt 6):1209-1215. doi: 10.1099/ijs.0.64121-0.

Abstract

Two denitrifying strains of heterotrophic, facultatively anaerobic bacteria, designated ZD1(T) and ZT1(T), were isolated from sediment samples collected from mangrove ecosystems in Taiwan. The isolates were Gram-negative. Cells grown in broth cultures were straight rods that were motile by means of a single polar flagellum. The isolates grew optimally in 1-3 % NaCl, but NaCl was not an absolute requirement for growth; only strain ZT1(T) grew in 13-14 % NaCl. Both isolates grew between 10 and 45 degrees C, with optimum growth at 30-35 degrees C. They were capable of anaerobic growth by denitrifying metabolism using nitrate or nitrous oxide as terminal electron acceptors or, alternatively, by fermenting glucose, sucrose or mannitol as substrates. C(18 : 1)omega7c was the most abundant fatty acid (32.6-35.7 %). The other major fatty acids included C(16 : 1)omega7c (27.5-29.4 %) and C(16 : 0) (20.1-22.0 %). The two isolates had 16S rRNA gene sequence similarity of 96.8 % and shared 94.1-96.8 % sequence similarity with the most closely related species, Oceanimonas doudoroffii, Oceanimonas baumannii, Oceanimonas smirnovii and Oceanisphaera litoralis. They could be distinguished from these species in that they were capable of fermentative metabolism, had relatively high DNA G+C contents (62.0-64.0 mol%) and contained C(18 : 1)omega7c instead of C(16 : 1)omega7c as the most abundant fatty acid. Characterization data accumulated in this study revealed that the two denitrifying isolates could be classified as representatives of two novel species in a new genus, Zobellella gen. nov., with Zobellella denitrificans sp. nov. (type strain ZD1(T) = BCRC 17493(T) = JCM 13380(T)) as the type species and Zobellella taiwanensis sp. nov. (type strain ZT1(T) = BCRC 17494(T) = JCM 13381(T)) as a second species.

摘要

从台湾红树林生态系统采集的沉积物样本中分离出两株异养兼性厌氧反硝化细菌菌株,分别命名为ZD1(T)和ZT1(T)。分离菌株为革兰氏阴性。在肉汤培养基中生长的细胞为直杆状,借助单根极生鞭毛运动。分离菌株在1-3% NaCl中生长最佳,但NaCl并非生长的绝对必需物质;只有菌株ZT1(T)能在13-14% NaCl中生长。两株分离菌株均在10至45℃之间生长,最适生长温度为30-35℃。它们能够通过以硝酸盐或一氧化二氮作为末端电子受体进行反硝化代谢进行厌氧生长,或者以葡萄糖、蔗糖或甘露醇作为底物进行发酵。C(18 : 1)ω7c是最丰富的脂肪酸(32.6-35.7%)。其他主要脂肪酸包括C(16 : 1)ω7c(27.5-29.4%)和C(16 : 0)(20.1-22.0%)。这两株分离菌株的16S rRNA基因序列相似性为96.8%,与最密切相关的物种杜氏海洋单胞菌、鲍氏海洋单胞菌、斯氏海洋单胞菌和海岸海洋球藻的序列相似性为94.1-96.8%。它们可与这些物种区分开来,因为它们能够进行发酵代谢,具有相对较高的DNA G+C含量(62.0-64.0 mol%),并且含有C(18 : 1)ω7c而非C(16 : 1)ω7c作为最丰富的脂肪酸。本研究积累的特征数据表明,这两株反硝化分离菌株可被归类为一个新属——佐贝氏菌属(Zobellella gen. nov.)中两个新物种的代表,其中反硝化佐贝氏菌(Zobellella denitrificans sp. nov.)(模式菌株ZD1(T)=BCRC 17493(T)=JCM 13380(T))为模式种,台湾佐贝氏菌(Zobellella taiwanensis sp. nov.)(模式菌株ZT1(T)=BCRC 17494(T)=JCM 13381(T))为第二个物种。

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