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犬类基因组中的成分相关性反映了与人类基因的相似性。

Compositional correlations in canine genome reflects similarity with human genes.

作者信息

Joy Faustin, Basak Surajit, Gupta Sanjib Kumar, Das Pranab Jyoti, Ghosh Shankar Kumar, Ghosh Tapash Chandra

机构信息

Bioinformatics Centre, Bose Institute, Kolkata, India.

出版信息

J Biochem Mol Biol. 2006 May 31;39(3):240-6. doi: 10.5483/bmbrep.2006.39.3.240.

Abstract

The base compositional correlations that hold among various coding and noncoding regions of the canine genome have been analysed. The distribution pattern of genes, on the basis of GC(3) composition, shows a wide range similar to that observed in human. However the occurrence of maximum number of genes was observed in the range of 65-75% of GC(3) composition. The correlation between the coding DNA sequences of canine with the different noncoding regions (introns and flanking regions) is found to be significant and in many cases the degree of correlation show similarity to human genome. We found that these correlations are not limited to the GC content alone, but is holding at the level of the frequency of individual bases as well. The present study suggests that canines ideally belong to the predicted 'general mammalian pattern' of genome composition along with human beings.

摘要

对犬类基因组不同编码区和非编码区之间存在的碱基组成相关性进行了分析。基于GC(3)组成的基因分布模式显示出与人类观察到的范围相似的广泛范围。然而,在GC(3)组成的65 - 75%范围内观察到基因数量最多。发现犬类的编码DNA序列与不同非编码区(内含子和侧翼区)之间的相关性显著,并且在许多情况下,相关程度与人类基因组相似。我们发现这些相关性不仅限于GC含量,在单个碱基的频率水平上也存在。本研究表明,犬类在基因组组成上理想地与人类一样属于预测的“一般哺乳动物模式”。

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