人类基因组中Myc结合位点的识别由染色质环境决定。

Myc-binding-site recognition in the human genome is determined by chromatin context.

作者信息

Guccione Ernesto, Martinato Francesca, Finocchiaro Giacomo, Luzi Lucilla, Tizzoni Laura, Dall' Olio Valentina, Zardo Giuseppe, Nervi Clara, Bernard Loris, Amati Bruno

机构信息

Department of Experimental Oncology, European Institute of Oncology, IFOM-IEO Campus, Milan 20139, Italy.

出版信息

Nat Cell Biol. 2006 Jul;8(7):764-70. doi: 10.1038/ncb1434. Epub 2006 Jun 11.

Abstract

Large-scale chromatin immunoprecipitation (ChIP) studies have been effective in unravelling the distribution of DNA-binding transcription factors along eukaryotic genomes, but specificity determinants remain elusive. Gene-regulatory regions display distinct histone variants and modifications (or marks). An attractive hypothesis is that these marks modulate protein recognition, but whether or not this applies to transcription factors remains unknown. Based on large-scale datasets and quantitative ChIP, we dissect the correlations between 35 histone marks and genomic binding by the transcription factor Myc. Our data reveal a relatively simple combinatorial organization of histone marks in human cells, with a few main groups of marks clustering on distinct promoter populations. A stretch of chromatin bearing high H3 K4/K79 methylation and H3 acetylation (or 'euchromatic island'), which is generally associated with a pre-engaged basal transcription machinery, is a strict pre-requisite for recognition of any target site by Myc (whether the consensus CACGTG or an alternative sequence). These data imply that tethering of a transcription factor to restricted chromatin domains is rate-limiting for sequence-specific DNA binding in vivo.

摘要

大规模染色质免疫沉淀(ChIP)研究在揭示DNA结合转录因子沿真核生物基因组的分布方面卓有成效,但特异性决定因素仍不清楚。基因调控区域表现出独特的组蛋白变体和修饰(或标记)。一个引人注目的假说是,这些标记调节蛋白质识别,但这是否适用于转录因子仍不清楚。基于大规模数据集和定量ChIP,我们剖析了35种组蛋白标记与转录因子Myc的基因组结合之间的相关性。我们的数据揭示了人类细胞中组蛋白标记相对简单的组合组织,几组主要标记聚集在不同的启动子群体上。一段带有高H3 K4/K79甲基化和H3乙酰化的染色质(或“常染色质岛”),通常与预先结合的基础转录机制相关,是Myc识别任何靶位点(无论是共有序列CACGTG还是替代序列)的严格先决条件。这些数据表明,转录因子与受限染色质结构域的结合是体内序列特异性DNA结合的限速步骤。

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