Bosma Wayne B, Bartelt Robert J, Momany Frank A
Department of Chemistry and Biochemistry, Bradley University, Peoria, Illinois 61625, USA.
J Org Chem. 2006 Jun 23;71(13):4748-58. doi: 10.1021/jo0524730.
A pheromone from the beetle, Galerucella calmariensis, was recently isolated and identified (Bartelt, R. J. et al. J. Chem. Ecol. 2006, 32, 693-712) as a 14-carbon, bicyclic dimethylfuran lactone, with the systematic name 12,13-dimethyl-5,14-dioxabicyclo[9.2.1]tetradeca-1(13),11-dien-4-one. The main 12-membered lactone ring is very flexible; as a result, there exist multiple possible conformations. The preferred conformation cannot be deduced solely from room-temperature NMR measurements. Using density functional (DFT) studies, 26 unique conformers with energies within 10.0 kcal/mol of the global minimum-energy structure were found. A mirror-image plane exists so that each conformer has an "inverse" structure with the same energy, for which the dihedral angles around the flexible ring have opposite sign. The isotropic 1H and 13C NMR chemical shifts of the DFT-optimized structures were calculated using the gauge-including atomic orbital (GIAO) method. By considering the relative energies of the conformers and the calculated and observed NMR spectra, we concluded that the molecule exists primarily as a mixture of two distinct conformers at room temperature, each being present with its mirror-image inverse. Structural interconversions among these likely occur on a time scale that is fast compared to the NMR experiments. Using mode-following and dihedral-driving techniques, several potential pathways were found for the conversion of the lowest-energy conformer to its mirror-image structure. Ab initio molecular dynamics (AIMD) using the 4-31G basis set was carried out for 50 ps to test the availability of various low-energy minima and the transition states found from the searches noted above.
最近,一种来自甲虫——甘蓝斑色天牛(Galerucella calmariensis)的信息素被分离并鉴定出来(巴特尔特,R. J. 等人,《化学生态学杂志》,2006年,32卷,693 - 712页),它是一种含14个碳原子的双环二甲基呋喃内酯,系统命名为12,13 - 二甲基 - 5,14 - 二氧杂双环[9.2.1]十四碳 - 1(13),11 - 二烯 - 4 - 酮。其主要的12元内酯环非常灵活;因此,存在多种可能的构象。仅从室温核磁共振测量无法推断出优选构象。通过密度泛函(DFT)研究,发现了26种独特的构象异构体,其能量在全局最低能量结构的10.0千卡/摩尔范围内。存在一个镜像平面,使得每个构象异构体都有一个能量相同的“反向”结构,其围绕柔性环的二面角符号相反。使用含规范原子轨道(GIAO)方法计算了DFT优化结构的各向同性1H和13C核磁共振化学位移。通过考虑构象异构体的相对能量以及计算得到的和观察到的核磁共振谱,我们得出结论,该分子在室温下主要以两种不同构象异构体的混合物形式存在,每种构象异构体都与其镜像反向结构同时存在。这些结构之间的相互转化可能发生在与核磁共振实验相比很快的时间尺度上。使用模式跟踪和二面角驱动技术,发现了几种将最低能量构象异构体转化为其镜像结构的潜在途径。使用4 - 31G基组进行了50皮秒的从头算分子动力学(AIMD)计算,以测试各种低能量极小值和上述搜索中找到的过渡态的可用性。