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通过单分子荧光光谱法揭示绿色荧光蛋白(GFP)的时间分布

Unfolding time distribution of GFP by single molecule fluorescence spectroscopy.

作者信息

Chirico G, Cannone F, Diaspro A

机构信息

Department of Physics, University of Milano Bicocca, Piazza della Scienza 3, Milano, Italy.

出版信息

Eur Biophys J. 2006 Oct;35(8):663-74. doi: 10.1007/s00249-006-0075-5. Epub 2006 Jun 20.

DOI:10.1007/s00249-006-0075-5
PMID:16786346
Abstract

We have studied the unfolding of single molecules of GFP-mut2 mutant trapped in wet silica gels in a wide range of GuHCl concentration. After the addition of denaturant, the number of fluorescent molecules decreases with unfolding rates (of the order of 0.01 min(-1)) that are in very good agreement with bulk fluorescence and circular dichroism data. Unexpectedly, single molecule experiments show rare fluctuations in the number of fluorescent proteins at equilibrium. On the other hand, although a first approximate description of the number decays can be reasonably performed by single exponential functions, the distributions of the single molecule unfolding times show a maximum at times congruent with 50-100 min up to the denaturation midpoint concentration of [GuHCl] congruent with 2.5 M. A theoretical analysis of the distributions indicates that this feature is a fingerprint of the competition between unfolding and refolding processes when the protein is very far from the midpoint denaturant concentration.

摘要

我们研究了被困在湿硅胶中的绿色荧光蛋白突变体GFP-mut2单分子在广泛的盐酸胍(GuHCl)浓度范围内的解折叠情况。加入变性剂后,荧光分子的数量随着解折叠速率(约为0.01 min⁻¹)而减少,这与体相荧光和圆二色性数据非常吻合。出乎意料的是,单分子实验表明,在平衡状态下荧光蛋白的数量存在罕见的波动。另一方面,虽然单指数函数可以对数量衰减进行合理的初步近似描述,但单分子解折叠时间的分布在与50 - 100分钟相当的时间处出现最大值,直至变性中点浓度[GuHCl]约为2.5 M。对这些分布的理论分析表明,当蛋白质距离变性剂中点浓度很远时,这一特征是解折叠和重折叠过程之间竞争的标志。

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本文引用的文献

1
Pre-unfolding resonant oscillations of single green fluorescent protein molecules.单个绿色荧光蛋白分子的预展开共振振荡
Science. 2005 Aug 12;309(5737):1096-100. doi: 10.1126/science.1115001.
2
Tracking unfolding and refolding of single GFPmut2 molecules.追踪单个GFPmut2分子的解折叠和重折叠过程。
Biophys J. 2005 Sep;89(3):2033-45. doi: 10.1529/biophysj.105.064584. Epub 2005 Jul 1.
3
Unfolding of Green Fluorescent Protein mut2 in wet nanoporous silica gels.绿色荧光蛋白突变体2在湿纳米多孔硅胶中的解折叠
金星折叠研究表明,在轻度酸性条件下,其黄色荧光具有很强的离子依赖性。
J Biol Chem. 2010 Feb 12;285(7):4859-69. doi: 10.1074/jbc.M109.000695. Epub 2009 Nov 9.
4
Environment effects on the oscillatory unfolding kinetics of GFP.
Eur Biophys J. 2007 Sep;36(7):795-803. doi: 10.1007/s00249-007-0160-4. Epub 2007 Apr 12.
Protein Sci. 2005 May;14(5):1125-33. doi: 10.1110/ps.041190805. Epub 2005 Mar 31.
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Protein folding and the organization of the protein topology universe.蛋白质折叠与蛋白质拓扑结构宇宙的组织
Trends Biochem Sci. 2005 Jan;30(1):13-9. doi: 10.1016/j.tibs.2004.11.008.
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Single molecule spectroscopic characterization of GFP-MUT2 mutant for two-photon microscopy applications.用于双光子显微镜应用的GFP-MUT2突变体的单分子光谱表征。
Microsc Res Tech. 2004 Nov;65(4-5):186-93. doi: 10.1002/jemt.20125.
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FEBS Lett. 2004 Jun 4;567(2-3):333-8. doi: 10.1016/j.febslet.2004.04.089.
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The protein folding 'speed limit'.蛋白质折叠的“速度限制”。
Curr Opin Struct Biol. 2004 Feb;14(1):76-88. doi: 10.1016/j.sbi.2004.01.013.
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Single-molecule measurement of protein folding kinetics.蛋白质折叠动力学的单分子测量
Science. 2003 Aug 29;301(5637):1233-5. doi: 10.1126/science.1085399.
9
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J Microsc. 2003 May;210(Pt 2):149-57. doi: 10.1046/j.1365-2818.2003.01187.x.
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