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弗氏柠檬酸杆菌酪氨酸酚裂解酶中的天冬氨酸214可确保外部醛亚胺中间体具有足够的C-H酸度,并使辅因子在活性位点具有正确的方向。

Aspartic acid 214 in Citrobacter freundii tyrosine phenol-lyase ensures sufficient C--H-acidity of the external aldimine intermediate and proper orientation of the cofactor at the active site.

作者信息

Demidkina T V, Faleev N G, Papisova A I, Bazhulina N P, Kulikova V V, Gollnick P D, Phillips R S

机构信息

Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia.

出版信息

Biochim Biophys Acta. 2006 Jul;1764(7):1268-76. doi: 10.1016/j.bbapap.2006.05.001. Epub 2006 May 16.

Abstract

In the X-ray structure of tyrosine phenol-lyase (TPL) Asp214 is located at H-bonding distance from the N1 atom of the cofactor. This residue has been replaced with Ala and Asn and the properties of the mutant enzymes have been studied. The substitutions result in a decrease in the cofactor affinity of about four orders of magnitude. D214A and D214N TPLs do not catalyze the decomposition of l-Tyr and 3-fluoro-l-Tyr. They decompose substrates, containing better leaving groups with rates reduced by one or two orders of magnitude. Lognormal resolution of the spectra of the mutant enzymes revealed that the N1 atom of the cofactor is deprotonated. Spectral characteristics of internal and external aldimines of the mutant TPLs and the data on their interaction with quasisubstrates demonstrate that replacements of Asp214 lead to alteration of active site conformations. The mutant enzymes do not form noticeable amounts of a quinonoid upon interaction with inhibitors, but catalyze isotope exchange of C-alpha-proton of a number of amino acids for deuterium in (2)H(2)O. The k(ex) values for the isotope exchange of l-phenylalanine and 3-fluoro-l-tyrosine are close to the k(cat) values for reacting substrates. Thus, for the mutant TPLs the stage of C-alpha-proton abstraction may be considered as a rate-limiting for the whole reaction.

摘要

在酪氨酸酚裂解酶(TPL)的X射线结构中,天冬氨酸214(Asp214)位于与辅因子N1原子的氢键距离处。该残基已被丙氨酸(Ala)和天冬酰胺(Asn)取代,并对突变酶的性质进行了研究。这些取代导致辅因子亲和力下降约四个数量级。D214A和D214N TPL不催化L-酪氨酸(l-Tyr)和3-氟-L-酪氨酸(3-fluoro-l-Tyr)的分解。它们分解含有更好离去基团的底物,速率降低了一两个数量级。突变酶光谱的对数正态分辨率显示辅因子的N1原子去质子化。突变TPL的内部和外部醛亚胺的光谱特征及其与准底物相互作用的数据表明,Asp214的取代导致活性位点构象改变。突变酶与抑制剂相互作用时不会形成大量的醌类化合物,但会催化许多氨基酸的α-碳原子上的质子与重水(2H2O)中的氘进行同位素交换。L-苯丙氨酸(l-phenylalanine)和3-氟-L-酪氨酸的同位素交换k(ex)值接近反应底物的k(cat)值。因此,对于突变TPL,α-碳原子上质子夺取阶段可被视为整个反应的限速步骤。

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