Makabe Koki, Tereshko Valentina, Gawlak Grzegorz, Yan Shude, Koide Shohei
Department of Biochemistry and Molecular Biology, The University of Chicago, Illinois 60637, USA.
Protein Sci. 2006 Aug;15(8):1907-14. doi: 10.1110/ps.062246706. Epub 2006 Jul 5.
Outer surface protein A (OspA) from Borrelia burgdorferi has an unusual dumbbell-shaped structure in which two globular domains are connected with a "single-layer" beta-sheet (SLB). The protein is highly soluble, and it has been recalcitrant to crystallization. Only OspA complexes with Fab fragments have been successfully crystallized. OspA contains a large number of Lys and Glu residues, and these "high entropy" residues may disfavor crystal packing because some of them would need to be immobilized in forming a crystal lattice. We rationally designed a total of 13 surface mutations in which Lys and Glu residues were replaced with Ala or Ser. We successfully crystallized the mutant OspA without a bound Fab fragment and extended structure analysis to a 1.15 Angstroms resolution. The new high-resolution structure revealed a unique backbone hydration pattern of the SLB segment in which water molecules fill the "weak spots" on both faces of the antiparallel beta-sheet. These well-defined water molecules provide additional structural links between adjacent beta-strands, and thus they may be important for maintaining the rigidity of the SLB that inherently lacks tight packing afforded by a hydrophobic core. The structure also revealed new information on the side-chain dynamics and on a solvent-accessible cavity in the core of the C-terminal globular domain. This work demonstrates the utility of extensive surface mutation in crystallizing recalcitrant proteins and dramatically improving the resolution of crystal structures, and provides new insights into the stabilization mechanism of OspA.
伯氏疏螺旋体的外表面蛋白A(OspA)具有一种不寻常的哑铃状结构,其中两个球状结构域通过一个“单层”β-折叠(SLB)相连。该蛋白高度可溶,难以结晶。只有与Fab片段形成的OspA复合物成功结晶。OspA含有大量的赖氨酸(Lys)和谷氨酸(Glu)残基,这些“高熵”残基可能不利于晶体堆积,因为其中一些残基在形成晶格时需要固定。我们合理设计了总共13个表面突变,将赖氨酸和谷氨酸残基替换为丙氨酸(Ala)或丝氨酸(Ser)。我们成功地结晶了没有结合Fab片段的突变型OspA,并将结构分析扩展到1.15埃的分辨率。新的高分辨率结构揭示了SLB片段独特的主链水合模式,其中水分子填充了反平行β-折叠两面的“弱点”。这些明确的水分子在相邻的β-链之间提供了额外的结构连接,因此它们对于维持SLB的刚性可能很重要,而SLB本身缺乏疏水核心提供的紧密堆积。该结构还揭示了关于侧链动力学和C末端球状结构域核心中一个溶剂可及腔的新信息。这项工作证明了广泛的表面突变在结晶难结晶蛋白和显著提高晶体结构分辨率方面的实用性,并为OspA的稳定机制提供了新的见解。