Biancalana Matthew, Makabe Koki, Yan Shude, Koide Shohei
Department of Biochemistry and Molecular Biology, The University of Chicago, 929 East 57th Street, Chicago, Illinois, 60637.
Protein Sci. 2015 May;24(5):841-9. doi: 10.1002/pro.2657. Epub 2015 Mar 25.
Site-directed mutagenesis is a powerful tool for altering the structure and function of proteins in a focused manner. Here, we examined how a model β-sheet protein could be tuned by mutation of numerous surface-exposed residues to aromatic amino acids. We designed these aromatic side chain "clusters" at highly solvent-exposed positions in the flat, single-layer β-sheet of Borrelia outer surface protein A (OspA). This unusual β-sheet scaffold allows us to interrogate the effects of these mutations in the context of well-defined structure but in the absence of the strong scaffolding effects of globular protein architecture. We anticipated that the introduction of a cluster of aromatic amino acid residues on the β-sheet surface would result in large conformational changes and/or stabilization and thereby provide new means of controlling the properties of β-sheets. Surprisingly, X-ray crystal structures revealed that the introduction of aromatic clusters produced only subtle conformational changes in the OspA β-sheet. Additionally, despite burying a large degree of hydrophobic surface area, the aromatic cluster mutants were slightly less stable than the wild-type scaffold. These results thereby demonstrate that the introduction of aromatic cluster mutations can serve as a means for subtly modulating β-sheet conformation in protein design.
定点诱变是一种强有力的工具,可用于有针对性地改变蛋白质的结构和功能。在此,我们研究了如何通过将众多表面暴露残基突变为芳香族氨基酸来对一种β折叠模型蛋白进行调控。我们在伯氏疏螺旋体表面蛋白A(OspA)的扁平单层β折叠中高度暴露于溶剂的位置设计了这些芳香族侧链“簇”。这种不同寻常的β折叠支架使我们能够在结构明确的背景下研究这些突变的影响,但不存在球状蛋白质结构的强大支架作用。我们预计在β折叠表面引入一组芳香族氨基酸残基会导致大的构象变化和/或稳定性增加,从而提供控制β折叠性质的新方法。令人惊讶的是,X射线晶体结构显示,芳香族簇的引入仅在OspAβ折叠中产生了细微的构象变化。此外,尽管掩埋了大量的疏水表面积,但芳香族簇突变体的稳定性略低于野生型支架。因此,这些结果表明,芳香族簇突变的引入可作为在蛋白质设计中微调β折叠构象的一种手段。