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水的平移熵在蛋白质压力变性中的关键重要性。

Crucial importance of translational entropy of water in pressure denaturation of proteins.

作者信息

Harano Yuichi, Kinoshita Masahiro

机构信息

International Innovation Center, Kyoto University, Uji, Kyoto 611-0011, Japan.

出版信息

J Chem Phys. 2006 Jul 14;125(2):24910. doi: 10.1063/1.2217011.

Abstract

We present statistical thermodynamics of pressure denaturation of proteins, in which the three-dimensional integral equation theory is employed. It is applied to a simple model system focusing on the translational entropy of the solvent. The partial molar volume governing the pressure dependence of the structural stability of a protein is expressed for each structure in terms of the excluded volume for the solvent molecules, the solvent-accessible surface area (ASA), and a parameter related to the solvent-density profile formed near the protein surface. It is argued that the entropic effect originating from the translational movement of water molecules plays critical roles in the pressure-induced denaturation. We also show that the exceptionally small size of water molecules among dense liquids in nature is crucial for pressure denaturation. An unfolded structure, which is only moderately less compact than the native structure but has much larger ASA, is shown to turn more stable than the native one at an elevated pressure. The water entropy for the native structure is higher than that for the unfolded structure in the low-pressure region, whereas the opposite is true in the high-pressure region. Such a structure is characterized by the cleft and/or swelling and the water penetration into the interior. In another solvent whose molecular size is 1.5 times larger than that of water, however, the inversion of the stability does not occur any longer. The random coil becomes relatively more destabilized with rising pressure, irrespective of the molecular size of the solvent. These theoretical predictions are in qualitatively good agreement with the experimental observations.

摘要

我们提出了蛋白质压力变性的统计热力学,其中采用了三维积分方程理论。它被应用于一个简单的模型系统,重点关注溶剂的平动熵。对于每种结构,控制蛋白质结构稳定性压力依赖性的偏摩尔体积根据溶剂分子的排斥体积、溶剂可及表面积(ASA)以及与蛋白质表面附近形成的溶剂密度分布相关的参数来表示。有人认为,水分子平动产生的熵效应在压力诱导的变性中起关键作用。我们还表明,自然界中致密液体中水分子异常小的尺寸对压力变性至关重要。一种展开结构,其紧凑程度仅略低于天然结构,但具有大得多的ASA,在高压下比天然结构更稳定。在低压区域,天然结构的水熵高于展开结构的水熵,而在高压区域则相反。这种结构的特征是有裂缝和/或肿胀以及水渗透到内部。然而,在另一种分子尺寸比水大1.5倍的溶剂中,稳定性的反转不再发生。无论溶剂的分子尺寸如何,无规卷曲随着压力升高变得相对更不稳定。这些理论预测与实验观察结果在定性上吻合良好。

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