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核碱基的电子结构。

Electronic structure of the nucleobases.

作者信息

MacNaughton J, Moewes A, Kurmaev E Z

机构信息

Department of Physics and Engineering Physics, University of Saskatchewan, 116 Science Place, Saskatoon, Saskatchewan S7N 5E2, Canada.

出版信息

J Phys Chem B. 2005 Apr 28;109(16):7749-57. doi: 10.1021/jp0463058.

Abstract

We present a comparison between experimental and calculated soft X-ray spectra of DNA's nucleobases, adenine (A), guanine (G), cytosine (C), and thymine (T) using X-ray absorption spectroscopy (XAS) and soft X-ray emission spectroscopy (XES). Spectra of the 1s thresholds of carbon, nitrogen, and oxygen give a complete picture of the occupied and unoccupied partial density of states of the nucleobases. A combination of both Hartree-Fock and density functional theory calculations are used in the comparison to experimental results. Most experimental results agree well with our theoretical calculations for the XAS and XES of all bases. All spectral features are assigned. A comparison of the experimental highest occupied molecular orbital-lowest unoccupied molecular orbital energy gaps is made to the diverse values predicted in the literature.

摘要

我们利用X射线吸收光谱(XAS)和软X射线发射光谱(XES),对DNA的核碱基腺嘌呤(A)、鸟嘌呤(G)、胞嘧啶(C)和胸腺嘧啶(T)的实验软X射线光谱与计算软X射线光谱进行了比较。碳、氮和氧的1s阈值光谱给出了核碱基占据态和未占据态的部分态密度的完整图像。在与实验结果的比较中,使用了哈特里-福克理论和密度泛函理论计算相结合的方法。大多数实验结果与我们对所有碱基的XAS和XES的理论计算结果吻合良好。所有光谱特征均已确定。将实验得到的最高占据分子轨道-最低未占据分子轨道能隙与文献中预测的不同值进行了比较。

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