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表面相互作用对半柔性链折叠和强制解离的影响。

Influence of surface interactions on folding and forced unbinding of semiflexible chains.

作者信息

Barsegov V, Thirumalai D

机构信息

Biophysics Program, Institute for Physical Science and Technology, and Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland 20742, USA.

出版信息

J Phys Chem B. 2005 Nov 24;109(46):21979-88. doi: 10.1021/jp053803n.

Abstract

We have investigated the folding and forced unbinding transitions of adsorbed semiflexible polymer chains using theory and simulations. These processes describe, at an elementary level, a number of biologically relevant phenomena that include adhesive interactions between proteins and tethering of receptors to cell walls. The binding interface is modeled as a solid surface, and the wormlike chain (WLC) is used for the semiflexible chain (SC). Using Langevin simulations, in the overdamped limit we examine the ordering kinetics of racquet-like and toroidal structures in the presence of an attractive interaction between the surface and the polymer chain. For a range of interactions, temperature, and the persistence length, l(p), we obtained the monomer density distribution, n(x), (x is the perpendicular distance of a tagged chain end from the surface) for all of the relevant morphologies. There is a single peak in n(x) inside the range of attractive forces, b, for chains in the extended conformations, whereas in racquet and toroidal structures there is an additional peak at x approximately b. The simulated results for n(x) are in good agreement with theory. The formation of toroids on the surface appears to be a first-order transition as evidenced by the bimodal distribution in n(x). The theoretical result underestimates the simulated n(x) for x << b and follows n(x) closely for x >/= b; the calculated density agrees exactly with n(x) in the range x << b. The chain-surface interaction is probed by subjecting the surface structures to a pulling force, f. The average extension, x( f), as a function of f exhibits a sigmoidal profile with sharp all-or-none transition at the unfolding force threshold f = f(c) which increases for more structured states. Simulated x(f) compare well with the theoretical predictions. The critical force, f(c), is a function of l(s)/l(c) for a fixed temperature, where l(c) and l(s) are the length scales that express the strength of the intramolecular and SC-surface attraction, respectively. For a fixed l(s), f(c) increases as l(p) decreases.

摘要

我们运用理论和模拟方法研究了吸附的半柔性聚合物链的折叠和强制解链转变。这些过程在基本层面上描述了许多与生物学相关的现象,包括蛋白质之间的粘附相互作用以及受体与细胞壁的 tethering(此处可能有专业术语未准确翻译,原词有误,推测可能是“ tethering”的意思是“ tether”,即“系链、栓系” )。结合界面被建模为固体表面,而蠕虫状链(WLC)用于模拟半柔性链(SC)。使用朗之万模拟,在过阻尼极限下,我们研究了在表面与聚合物链之间存在吸引相互作用时球拍状和环形结构的有序动力学。对于一系列相互作用、温度和持久长度 l(p),我们获得了所有相关形态下的单体密度分布 n(x)(x 是标记链端到表面的垂直距离)。对于处于伸展构象的链,在吸引力范围 b 内,n(x)有一个单峰,而在球拍状和环形结构中,在 x 约为 b 处有一个额外的峰。n(x)的模拟结果与理论很好地吻合。表面上环形结构的形成似乎是一级转变,这由 n(x)中的双峰分布证明。理论结果对于 x << b 时低估了模拟的 n(x),而对于 x >= b 时与 n(x)紧密跟随;计算出的密度在 x << b 范围内与 n(x)完全一致。通过对表面结构施加拉力 f 来探测链 - 表面相互作用。平均伸长 x(f)作为 f 的函数呈现出 S 形曲线,在展开力阈值 f = f(c)处有尖锐的全或无转变,对于结构更复杂的状态,f(c)会增加。模拟的 x(f)与理论预测比较吻合。对于固定温度,临界力 f(c)是 l(s)/l(c)的函数,其中 l(c)和 l(s)分别是表示分子内和 SC - 表面吸引力强度的长度尺度。对于固定的 l(s),f(c)随着 l(p)的减小而增加。

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