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添加稳定盐和去稳定盐后,核糖核酸酶A的酶活性与Nε2-组氨酸12和Nδ1-组氨酸119之间距离变化的相关性。

The correlation of RNase A enzymatic activity with the changes in the distance between Nepsilon2-His12 and N delta1-His119 upon addition of stabilizing and destabilizing salts.

作者信息

Moosavi-Movahedi A A, Gharanfoli M, Jalili S, Ahmad F, Chamani J, Hakimelahi G H, Sadeghi M, Amani M, Saboury A A

机构信息

Institute of Biochemistry and Biophysics, University of Tehran, Iran.

出版信息

Protein J. 2006 Feb;25(2):117-25. doi: 10.1007/s10930-006-0003-7.

Abstract

The effect of stabilizing and destabilizing salts on the catalytic behavior of ribonuclease A (RNase A) was investigated at pH 7.5 and 25 degrees C, using spectrophotometric, viscometric and molecular dynamic methods. The changes in the distance between N(epsilon2) of His(12) and N(delta1) of His(119) at the catalytic center of RNase A upon the addition of sodium sulfate, sodium hydrogen sulfate and sodium thiocyanate were evaluated by molecular dynamic methods. The compactness and expansion in terms of Stokes radius of RNase A upon the addition of sulfate ions as kosmotropic salts, and thiocyanate ion as a chaotropic salt, were estimated by viscometric measurements. Enzyme activity was measured using cytidine 2', 3'-cyclic monophosphate as a substrate. The results from the measurements of distances between N(epsilon2) of His(12) and N(delta1) of His(119) and Stokes radius suggest (i) that the presence of sulfate ions decreases the distance between the catalytic His residues and increases the globular compactness, and (ii) that there is an expansion of the enzyme surface as well as elongation of the catalytic center in the presence of thiocyanate ion. These findings are in agreement with activity measurements.

摘要

在pH 7.5和25摄氏度条件下,使用分光光度法、粘度法和分子动力学方法研究了稳定盐和去稳定盐对核糖核酸酶A(RNase A)催化行为的影响。通过分子动力学方法评估了在添加硫酸钠、硫酸氢钠和硫氰酸钠后,RNase A催化中心His(12)的N(ε2)与His(119)的N(δ1)之间距离的变化。通过粘度测量估算了添加作为促溶剂的硫酸根离子和作为离液剂的硫氰酸根离子后,RNase A在斯托克斯半径方面的紧密程度和膨胀情况。以胞苷2',3'-环磷酸为底物测量酶活性。His(12)的N(ε2)与His(119)的N(δ1)之间距离以及斯托克斯半径的测量结果表明:(i)硫酸根离子的存在会减小催化性His残基之间的距离并增加球状紧密程度;(ii)在硫氰酸根离子存在的情况下,酶表面会膨胀,催化中心会伸长。这些发现与活性测量结果一致。

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