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蛋白质中两两库仑相互作用的距离依赖性和盐敏感性。

Distance dependence and salt sensitivity of pairwise, coulombic interactions in a protein.

作者信息

Lee Kelly K, Fitch Carolyn A, García-Moreno E Bertrand

机构信息

Department of Biophysics, Johns Hopkins University, 3400 N. Charles Street, Baltimore, MD 21218, USA.

出版信息

Protein Sci. 2002 May;11(5):1004-16. doi: 10.1110/ps.4700102.

DOI:10.1110/ps.4700102
PMID:11967358
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2373567/
Abstract

Histidine pK(a) values were measured in charge-reversal (K78E, K97E, K127E, and K97E/K127E) and charge-neutralization (E10A, E101A, and R35A) mutants of staphylococcal nuclease (SNase) by (1)H-NMR spectroscopy. Energies of interaction between pairs of charges (DeltaG(ij)) were obtained from the shifts in pK(a) values relative to wild-type values. The data describe the distance dependence and salt sensitivity of pairwise coulombic interactions. Calculations with a continuum electrostatics method captured the experimental DeltaG(ij) when static structures were used and when the protein interior was treated empirically with a dielectric constant of 20. The DeltaG(ij) when r(ij) < or = 10 A were exaggerated slightly in the calculations. Coulomb's law with a dielectric constant near 80 and a Debye-Hückel term to account for screening by the ionic strength reproduced the salt sensitivity and distance dependence of DeltaG(ij) as well as the structure-based method. In their interactions with each other, surface charges behave as if immersed in water; the Debye length describes realistically the distance where interactions become negligible at a given ionic strength. On average, charges separated by distances (r(ij)) approximately 5 A interacted with DeltaG(ij) approximately 0.6 kcal/mole in 0.01 M KCl, but DeltaG(ij) decayed to < or =0.10 kcal/mole when r(ij) = 20 A. In 0.10 M KCl, DeltaG(ij) approximately 0.10 kcal/mole when r(ij) = 10 A. In 1.5 M KCl, only short-range interactions with r(ij) < or = 5 A persisted. Although at physiological ionic strengths the interactions between charges separated by more than 10 A are extremely weak, in situations where charge imbalance exists many weak interactions can cumulatively produce substantial effects.

摘要

通过¹H-NMR光谱法测定了葡萄球菌核酸酶(SNase)的电荷反转突变体(K78E、K97E、K127E和K97E/K127E)以及电荷中和突变体(E10A、E101A和R35A)中组氨酸的pK(a)值。根据相对于野生型值的pK(a)值变化,获得了电荷对之间的相互作用能(ΔG(ij))。这些数据描述了成对库仑相互作用的距离依赖性和盐敏感性。当使用静态结构且蛋白质内部用介电常数为20进行经验处理时,用连续静电学方法进行的计算捕捉到了实验性的ΔG(ij)。当r(ij)≤10 Å时,计算中ΔG(ij)略有夸大。介电常数接近80的库仑定律以及用于考虑离子强度屏蔽作用的德拜-休克尔项,与基于结构的方法一样,再现了ΔG(ij)的盐敏感性和距离依赖性。在相互作用中,表面电荷的行为就好像它们浸没在水中;德拜长度如实地描述了在给定离子强度下相互作用可忽略不计的距离。平均而言,在0.01 M KCl中,距离(r(ij))约为5 Å的电荷对相互作用的ΔG(ij)约为0.6 kcal/mol,但当r(ij)=20 Å时,ΔG(ij)衰减至≤0.10 kcal/mol。在0.10 M KCl中,当r(ij)=10 Å时,ΔG(ij)约为0.10 kcal/mol。在1.5 M KCl中,仅存在r(ij)≤5 Å的短程相互作用。尽管在生理离子强度下,相隔超过10 Å的电荷之间的相互作用极其微弱,但在存在电荷不平衡的情况下,许多弱相互作用可以累积产生显著影响。

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