Katoh Masuko, Katoh Masaru
M&M Medical BioInformatics, Hongo 113-0033, Japan.
Int J Mol Med. 2006 Sep;18(3):517-21.
Notch, FGF and WNT signaling pathways cross-talk during embryogenesis, tissue regeneration and carcinogenesis. Notch-ligand binding to Notch receptors leads to the cleavage of Notch receptors and the following nuclear translocation of Notch intracellular domain (NICD) to induce transcriptional activation of Notch target genes. Notch signaling inhibitors, NUMB and NUMB-like (NUMBL), are docking proteins with PTB domain. We searched for the TCF/LEF-binding site within the promoter region of NUMB and NUMBL genes. Because two TCF/LEF-binding sites were identified within human NUMB promoter based on bioinformatics and human intelligence (Humint), comparative integromics analyses on NUMB orthologs were further performed. Chimpanzee NUBM gene, consisting of 13 exons, was identified within NW_115880.1 genome sequence. XM_510045.1 was not the correct coding sequence for chimpanzee NUMB. Chimpanzee NUMB gene was found to encode a 651-amino-acid protein showing 99.5, 93.9 and 82.6% total-amino-acid identity with human NUMB, mouse Numb and chicken numb, respectively. Human NUMB mRNA was expressed in placenta, ES cells, neural tissues, trachea, testis, uterus, thymus, coronary artery as well as in a variety of tumors, such as cervical cancer, tong tumor, brain tumor, colorectal and breast cancer. Although distal TCF/LEF-binding site within human NUMB promoter was conserved only among primate NUMB orthologs, proximal TCF/LEF-binding site was conserved among primate and rodent NUMB orthologs. NUMB, JAG1, FGF18, FGF20 and SPRY4 are potent targets of the canonical WNT signaling pathway in progenitor cells. NUMB inhibits Notch signaling in progenitor cells to induce differentiation, while JAG1 activates Notch signaling in stem cells to maintain self-renewal potential. Because Notch signaling inhibitor NUMB was identified as the safe apparatus for the WNT - Notch signaling cycle, epigenetic silencing, deletion and loss-of-function mutation of NUMB gene could lead to carcinogenesis through the dysregulation of the WNT - Notch signaling cycle.
Notch、FGF和WNT信号通路在胚胎发生、组织再生和肿瘤发生过程中相互作用。Notch配体与Notch受体结合会导致Notch受体的切割以及随后Notch细胞内结构域(NICD)的核转位,从而诱导Notch靶基因的转录激活。Notch信号抑制剂NUMB和NUMB样蛋白(NUMBL)是具有PTB结构域的对接蛋白。我们在NUMB和NUMBL基因的启动子区域搜索了TCF/LEF结合位点。基于生物信息学和人工情报(Humint),在人类NUMB启动子中鉴定出两个TCF/LEF结合位点后,进一步对NUMB直系同源基因进行了比较整合组学分析。在NW_115880.1基因组序列中鉴定出由13个外显子组成的黑猩猩NUBM基因。XM_510045.1不是黑猩猩NUMB的正确编码序列。发现黑猩猩NUMB基因编码一种651个氨基酸的蛋白质,与人NUMB、小鼠Numb和鸡numb的总氨基酸同一性分别为99.5%、93.9%和82.6%。人类NUMB mRNA在胎盘、胚胎干细胞、神经组织、气管、睾丸、子宫、胸腺、冠状动脉以及多种肿瘤中表达,如宫颈癌、舌肿瘤、脑肿瘤、结直肠癌和乳腺癌。尽管人类NUMB启动子中的远端TCF/LEF结合位点仅在灵长类NUMB直系同源基因中保守,但近端TCF/LEF结合位点在灵长类和啮齿类NUMB直系同源基因中保守。NUMB、JAG1、FGF18、FGF20和SPRY4是祖细胞中经典WNT信号通路的有效靶点。NUMB在祖细胞中抑制Notch信号以诱导分化,而JAG1在干细胞中激活Notch信号以维持自我更新潜能。由于Notch信号抑制剂NUMB被确定为WNT-Notch信号循环的安全装置,NUMB基因的表观遗传沉默、缺失和功能丧失突变可能通过WNT-Notch信号循环失调导致肿瘤发生。