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DNA电子结构对环境和结构变化的依赖性。

Dependence of DNA electronic structure on environmental and structural variations.

作者信息

MacNaughton J B, Moewes A, Lee J S, Wettig S D, Kraatz H-B, Ouyang L Z, Ching W Y, Kurmaev E Z

机构信息

Department of Physics and Engineering Physics, University of Saskatchewan, 116 Science Place, Saskatoon, Saskatchewan S7N 5E2, Canada.

出版信息

J Phys Chem B. 2006 Aug 17;110(32):15742-8. doi: 10.1021/jp062516w.

Abstract

We present experimental and theoretical evidence that varying the local environment and physical structure of dried DNA has a direct impact on its electronic structure. By preparing samples of DNA in various solutions, it was possible to alter the type of ions present during the production of the DNA samples. These variations resulted in differences in the local chemical environment of the dried DNA molecules. X-ray absorption spectroscopy (XAS) and X-ray emission spectroscopy (XES) were used to probe the variations in the electronic structure of DNA samples. DFT calculations of a stack of 10 adenine (A)-thymine (T) nucleobase pairs show that slight structural variations in stacking height have a direct influence on the electronic structure and result in changes to the HOMO-LUMO gap. The effects of these differences in the local environment on the electronic structure are discussed and are related to the results of conductivity measurements of DNA.

摘要

我们提供了实验和理论证据,表明改变干燥DNA的局部环境和物理结构会对其电子结构产生直接影响。通过在各种溶液中制备DNA样品,可以改变DNA样品制备过程中存在的离子类型。这些变化导致干燥的DNA分子局部化学环境的差异。X射线吸收光谱(XAS)和X射线发射光谱(XES)被用于探测DNA样品电子结构的变化。对10个腺嘌呤(A)-胸腺嘧啶(T)核碱基对堆叠的密度泛函理论(DFT)计算表明,堆叠高度的微小结构变化对电子结构有直接影响,并导致最高占据分子轨道(HOMO)-最低未占据分子轨道(LUMO)能隙的变化。讨论了局部环境中这些差异对电子结构的影响,并将其与DNA电导率测量结果相关联。

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