Ohishi Hirofumi, Tsukamoto Koji, Hiyama Yoichi, Maezaki Naoyoshi, Tanaka Tetsuaki, Ishida Toshimasa
Osaka University of Pharmaceutical Sciences, 4-20-1 Nasahara, Takatsuki, Osaka 569-1094, Japan. orishi2gly.oups.ac.jp
Biochem Biophys Res Commun. 2006 Sep 29;348(3):794-8. doi: 10.1016/j.bbrc.2006.06.192. Epub 2006 Jul 13.
We succeeded in the crystallization of d(CGCGCG)2 and methylamine Complex. The crystal was clear and of sufficient size to collect the X-ray crystallographic data up to 1.0 A resolution using synchrotron radiation. As a result of X-ray crystallographic analysis of 2Fo-Fc map was much clear and easily traced. It is the first time monoamine co-crystallizes with d(CGCGCG)2. However, methylamine was not found from the complex crystal of d(CGCGCG)2 and methylamine. Five Mg ions were found around d(CGCGCG)2 molecules. These Mg ions neutralized the anion of 10 values of the phosphate group of DNA with five Mg2+. DNA stabilized only by a metallic ion and there is no example of analyzing the X-ray crystal structure like this. Mg ion stabilizes the conformation of Z-DNA. To use monoamine for crystallization of DNA, we found that we can get only d(CGCGCG)2 and Mg cation crystal. Only Mg cation can stabilize the conformation of Z-DNA. The method of using the monoamine for the crystallization of DNA can be applied to the crystallization of DNA of long chain of length in the future like this.
我们成功获得了d(CGCGCG)2与甲胺复合物的晶体。该晶体清晰且尺寸足够大,能够利用同步辐射收集分辨率高达1.0埃的X射线晶体学数据。对2Fo - Fc图进行X射线晶体学分析的结果显示,其非常清晰且易于追踪。这是首次单胺与d(CGCGCG)2共结晶。然而,在d(CGCGCG)2与甲胺的复合晶体中未发现甲胺。在d(CGCGCG)2分子周围发现了五个镁离子。这些镁离子用五个Mg2 +中和了DNA磷酸基团10个值的阴离子。DNA仅由金属离子稳定,且没有像这样分析X射线晶体结构的例子。镁离子稳定Z - DNA的构象。为了使用单胺进行DNA结晶,我们发现只能得到d(CGCGCG)2与镁阳离子晶体。只有镁阳离子能够稳定Z - DNA的构象。像这样使用单胺进行DNA结晶的方法未来可应用于长链DNA的结晶。