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J Mol Biol. 2006 Sep 15;362(2):173-83. doi: 10.1016/j.jmb.2006.07.046. Epub 2006 Jul 28.
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Patterned CpG methylation of silenced B cell gene promoters in classical Hodgkin lymphoma-derived and primary effusion lymphoma cell lines.经典型霍奇金淋巴瘤衍生细胞系和原发性渗出性淋巴瘤细胞系中沉默的B细胞基因启动子的模式化CpG甲基化
J Mol Biol. 2005 Jul 22;350(4):631-40. doi: 10.1016/j.jmb.2005.05.032.
2
A conserved sequence upstream of the B29 (Ig beta, CD79b) gene interacts with YY1.B29(Igβ,CD79b)基因上游的一个保守序列与YY1相互作用。
Mol Biol Rep. 2004 Mar;31(1):1-11. doi: 10.1023/b:mole.0000013489.04734.5e.
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State of histone modification in the rat Ig-beta/growth hormone locus.
Eur J Biochem. 2003 Jun;270(11):2532-9. doi: 10.1046/j.1432-1033.2003.03628.x.
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DNA methylation density influences the stability of an epigenetic imprint and Dnmt3a/b-independent de novo methylation.DNA甲基化密度影响表观遗传印记的稳定性以及不依赖Dnmt3a/b的从头甲基化。
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Differential activity by DNA-induced quarternary structures of POU transcription factors.POU转录因子的DNA诱导四级结构的差异活性
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DNA methylation dominates transcriptional silencing of Pax5 in terminally differentiated B cell lines.DNA甲基化在终末分化的B细胞系中主导着Pax5的转录沉默。
Mol Immunol. 2002 Jun;38(15):1161-6. doi: 10.1016/s0161-5890(02)00003-2.
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The fundamental role of epigenetic events in cancer.表观遗传事件在癌症中的重要作用。
Nat Rev Genet. 2002 Jun;3(6):415-28. doi: 10.1038/nrg816.
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Epigenetic codes for heterochromatin formation and silencing: rounding up the usual suspects.异染色质形成与沉默的表观遗传密码:搜罗常见因素。
Cell. 2002 Feb 22;108(4):489-500. doi: 10.1016/s0092-8674(02)00644-x.
9
Bob1 (OCA-B/OBF-1) differential transactivation of the B cell-specific B29 (Ig beta) and mb-1 (Ig alpha) promoters.Bob1(OCA-B/OBF-1)对B细胞特异性B29(Igβ)和mb-1(Igα)启动子的差异反式激活作用。
J Immunol. 2002 Apr 1;168(7):3369-75. doi: 10.4049/jimmunol.168.7.3369.
10
A defined locus control region determinant links chromatin domain acetylation with long-range gene activation.一个明确的基因座控制区决定因素将染色质结构域乙酰化与远程基因激活联系起来。
Mol Cell. 2002 Feb;9(2):291-302. doi: 10.1016/s1097-2765(02)00447-1.

垂体细胞中B29基因的沉默受其3'增强子调控。

B29 gene silencing in pituitary cells is regulated by its 3' enhancer.

作者信息

Malone Cindy S, Kuraishy Ali I, Fike Francesca M, Loya Ruchika G, Mikkili Minil R, Teitell Michael A, Wall Randolph

机构信息

Department of Biology, California State University Northridge, Northridge, CA 91330, USA.

出版信息

J Mol Biol. 2006 Sep 15;362(2):173-83. doi: 10.1016/j.jmb.2006.07.046. Epub 2006 Jul 28.

DOI:10.1016/j.jmb.2006.07.046
PMID:16920149
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2104784/
Abstract

B cell-specific B29 (Igbeta, CD79b) genes in rat, mouse, and human are situated between the 5' growth hormone (GH) locus control region and the 3' GH gene cluster. The entire GH genomic region is DNase 1 hypersensitive in GH-expressing pituitary cells, which predicts an "open" chromatin configuration, and yet B29 is not expressed. The B29 promoter and enhancers exhibit histone deacetylation in pituitary cells, but histone deacetylase inhibition failed to activate B29 expression. The B29 promoter and a 3' enhancer showed local dense DNA methylation in both pituitary and non-lymphoid cells consistent with gene silencing. However, DNA methyltransferase inhibition did not activate B29 expression either. B29 promoter constructs were minimally activated in transfected pituitary cells. Co-transfection of the B cell-specific octamer transcriptional co-activator Bob1 with the B29 promoter construct resulted in high level promoter activity in pituitary cells comparable to B29 promoter activity in transfected B cells. Unexpectedly, inclusion of the B29 3' enhancer in B29 promoter constructs strongly inhibited B29 transcriptional activity even when pituitary cells were co-transfected with Bob1. Both Oct-1 and Pit-1 bind the B29 3' enhancer in in vitro electrophoretic mobility shift assay and in in vivo chromatin immunoprecipitation analyses. These data indicate that the GH locus-embedded, tissue-specific B29 gene is silenced in GH-expressing pituitary cells by epigenetic mechanisms, the lack of a B cell-specific transcription factor, and likely by the B29 3' enhancer acting as a powerful silencer in a context and tissue-specific manner.

摘要

大鼠、小鼠和人类中B细胞特异性的B29(Igbeta,CD79b)基因位于5'生长激素(GH)基因座控制区和3'GH基因簇之间。在表达GH的垂体细胞中,整个GH基因组区域对DNase 1高度敏感,这预示着一种“开放”的染色质构型,但B29并未表达。B29启动子和增强子在垂体细胞中表现出组蛋白去乙酰化,但组蛋白去乙酰化酶抑制未能激活B29的表达。B29启动子和一个3'增强子在垂体和非淋巴细胞中均显示局部密集的DNA甲基化,这与基因沉默一致。然而,DNA甲基转移酶抑制也未激活B29的表达。B29启动子构建体在转染的垂体细胞中激活程度极低。将B细胞特异性八聚体转录共激活因子Bob1与B29启动子构建体共转染,导致垂体细胞中启动子活性水平较高,与转染B细胞中的B29启动子活性相当。出乎意料的是,即使垂体细胞与Bob1共转染,在B29启动子构建体中包含B29 3'增强子也会强烈抑制B29的转录活性。在体外电泳迁移率变动分析和体内染色质免疫沉淀分析中,Oct-1和Pit-1均与B29 3'增强子结合。这些数据表明,嵌入GH基因座的组织特异性B29基因在表达GH的垂体细胞中通过表观遗传机制、缺乏B细胞特异性转录因子以及可能通过B29 3'增强子以上下文和组织特异性方式作为强大的沉默子而被沉默。