Suppr超能文献

曼氏血吸虫NAD⁺分解代谢酶的重新设计:活性位点H103W突变恢复ADP-核糖基环化酶活性。

Redesign of Schistosoma mansoni NAD+ catabolizing enzyme: active site H103W mutation restores ADP-ribosyl cyclase activity.

作者信息

Kuhn Isabelle, Kellenberger Esther, Rognan Didier, Lund Frances E, Muller-Steffner Hélène, Schuber Francis

机构信息

Institut Gilbert Laustriat, UMR 7175 CNRS, Université Louis Pasteur (Strasbourg I), Faculté de Pharmacie, 67401 Illkirch, France.

出版信息

Biochemistry. 2006 Oct 3;45(39):11867-78. doi: 10.1021/bi060930g.

Abstract

Schistosoma mansoni NAD(P)+ catabolizing enzyme (SmNACE) is a new member of the ADP-ribosyl cyclase family. In contrast to all the other enzymes that are involved in the production of metabolites that elicit Ca2+ mobilization, SmNACE is virtually unable to transform NAD+ into the second messenger cyclic ADP-ribose (cADPR). Sequence alignments revealed that one of four conserved residues within the active site of these enzymes was replaced in SmNACE by a histidine (His103) instead of the highly conserved tryptophan. To find out whether the inability of SmNACE to catalyze the canonical ADP-ribosyl cyclase reaction is linked to this change, we have replaced His103 with a tryptophan. The H103W mutation in SmNACE was indeed found to restore ADP-ribosyl cyclase activity as cADPR amounts for 7% of the reaction products (i.e., a value larger than observed for other members of this family such as CD38). Introduction of a Trp103 residue provides some of the binding characteristics of mammalian ADP-ribosyl cyclases such as increased affinity for Cibacron blue and slow-binding inhibition by araF-NAD+. Homology modeling of wild-type and H103W mutant three-dimensional structures, and docking of substrates within the active sites, provides new insight into the catalytic mechanism of SmNACE. Both residue side chains share similar roles in the nicotinamide-ribose bond cleavage step leading to an E.ADP-ribosyl reaction intermediate. They diverge, however, in the evolution of this intermediate; His103 provides a more polar environment favoring the accessibility to water and hydrolysis leading to ADP-ribose at the expense of the intramolecular cyclization pathway resulting in cADPR.

摘要

曼氏血吸虫NAD(P)+分解代谢酶(SmNACE)是ADP-核糖基环化酶家族的新成员。与所有其他参与产生引发Ca2+动员的代谢物的酶不同,SmNACE几乎无法将NAD+转化为第二信使环ADP-核糖(cADPR)。序列比对显示,这些酶活性位点内四个保守残基中的一个在SmNACE中被组氨酸(His103)取代,而不是高度保守的色氨酸。为了确定SmNACE无法催化典型的ADP-核糖基环化酶反应是否与这一变化有关,我们将His103替换为色氨酸。确实发现SmNACE中的H103W突变恢复了ADP-核糖基环化酶活性,因为cADPR占反应产物的7%(即,该值大于该家族其他成员如CD38所观察到的值)。引入Trp103残基赋予了哺乳动物ADP-核糖基环化酶的一些结合特性,如对汽巴蓝的亲和力增加以及araF-NAD+的慢结合抑制。野生型和H103W突变体三维结构的同源建模以及活性位点内底物的对接,为SmNACE的催化机制提供了新的见解。两个残基侧链在导致E.ADP-核糖反应中间体的烟酰胺-核糖键裂解步骤中发挥相似作用。然而,它们在该中间体的演变过程中有所不同;His103提供了一个极性更强的环境,有利于水的可及性和水解,从而以牺牲导致cADPR的分子内环化途径为代价生成ADP-核糖。

相似文献

2
Schistosoma mansoni NAD(+) catabolizing enzyme: identification of key residues in catalysis.
Biochim Biophys Acta. 2013 Dec;1834(12):2520-7. doi: 10.1016/j.bbapap.2013.09.002. Epub 2013 Sep 12.
4
Mechanism of cyclizing NAD to cyclic ADP-ribose by ADP-ribosyl cyclase and CD38.
J Biol Chem. 2009 Oct 2;284(40):27629-36. doi: 10.1074/jbc.M109.030965. Epub 2009 Jul 28.
5
Structural basis for enzymatic evolution from a dedicated ADP-ribosyl cyclase to a multifunctional NAD hydrolase.
J Biol Chem. 2009 Oct 2;284(40):27637-45. doi: 10.1074/jbc.M109.031005. Epub 2009 Jul 28.
6
Connexin-43 hemichannels mediate cyclic ADP-ribose generation and its Ca2+-mobilizing activity by NAD+/cyclic ADP-ribose transport.
J Biol Chem. 2011 Dec 30;286(52):44480-90. doi: 10.1074/jbc.M111.307645. Epub 2011 Oct 27.
7
Porcine CD38 exhibits prominent secondary NAD(+) cyclase activity.
Protein Sci. 2016 Mar;25(3):650-61. doi: 10.1002/pro.2859. Epub 2016 Jan 12.
10
ADP-ribosyl cyclase: an enzyme that cyclizes NAD+ into a calcium-mobilizing metabolite.
Cell Regul. 1991 Mar;2(3):203-9. doi: 10.1091/mbc.2.3.203.

本文引用的文献

2
Designed divergent evolution of enzyme function.
Nature. 2006 Apr 20;440(7087):1078-82. doi: 10.1038/nature04607. Epub 2006 Feb 22.
4
The Amber biomolecular simulation programs.
J Comput Chem. 2005 Dec;26(16):1668-88. doi: 10.1002/jcc.20290.
5
Crystal structure of human CD38 extracellular domain.
Structure. 2005 Sep;13(9):1331-9. doi: 10.1016/j.str.2005.05.012.
7
Nicotinic acid adenine dinucleotide phosphate (NAADP)-mediated calcium signaling.
J Biol Chem. 2005 Oct 7;280(40):33693-6. doi: 10.1074/jbc.R500012200. Epub 2005 Aug 2.
9
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations.
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W665-7. doi: 10.1093/nar/gkh381.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验