Banta Scott, Vemula Murali, Yokoyama Tadaaki, Jayaraman Arul, Berthiaume François, Yarmush Martin L
Center for Engineering in Medicine, Shriners Hospital for Children, Massachusetts General Hospital, Harvard Medical School, Boston, Massachusetts 02114, USA.
Biotechnol Bioeng. 2007 May 1;97(1):118-37. doi: 10.1002/bit.21200.
Severe injury activates many stress-related and inflammatory pathways that can lead to a systemic hypermetabolic state. Prior studies using perfused hypermetabolic rat livers have identified intrinsic metabolic flux changes that were not dependent upon the continual presence of elevated stress hormones and substrate loads. We investigated the hypothesis that such changes may be due to persistent alterations in gene expression. A systemic hypermetabolic response was induced in rats by applying a moderate burn injury followed 2 days later by cecum ligation and puncture (CLP) to produce sepsis. Control animals received a sham-burn followed by CLP, or a sham-burn followed by sham-CLP. Two days after CLP, livers were analyzed for gene expression changes using DNA microarrays and for metabolism alterations by ex vivo perfusion coupled with Metabolic Flux Analysis. Burn injury prior to CLP increased fluxes while decreases in gene expression levels were observed. Conversely, CLP alone significantly increased metabolic gene expression, but decreased many of the corresponding metabolic fluxes. Burn injury combined with CLP led to the most dramatic changes, where concurrent changes in fluxes and gene expression levels occurred in about 1/3 of the reactions. The data are consistent with the notion that in this model, burn injury prior to CLP increased fluxes through post-translational mechanisms with little contribution of gene expression, while CLP treatment up-regulated the metabolic machinery by transcriptional mechanisms. Overall, these data show that mRNA changes measured at a single time point by DNA microarray analysis do not reliably predict metabolic flux changes in perfused livers.
严重损伤会激活许多与应激和炎症相关的通路,进而导致全身高代谢状态。先前使用灌注的高代谢大鼠肝脏进行的研究已经确定了内在的代谢通量变化,这些变化并不依赖于应激激素和底物负荷的持续升高。我们研究了这样一种假说,即这种变化可能是由于基因表达的持续改变所致。通过对大鼠施加中度烧伤,2天后再进行盲肠结扎和穿刺(CLP)以诱发脓毒症,从而诱导大鼠产生全身高代谢反应。对照动物接受假烧伤后再进行CLP,或假烧伤后再进行假CLP。CLP后两天,使用DNA微阵列分析肝脏的基因表达变化,并通过离体灌注结合代谢通量分析来检测代谢改变。CLP前的烧伤会增加通量,同时观察到基因表达水平下降。相反,单独的CLP会显著增加代谢基因的表达,但会降低许多相应的代谢通量。烧伤与CLP相结合导致了最显著的变化,约1/3的反应中通量和基因表达水平同时发生变化。这些数据与以下观点一致:在该模型中,CLP前的烧伤通过翻译后机制增加通量,基因表达的贡献很小,而CLP处理则通过转录机制上调代谢机制。总体而言,这些数据表明,通过DNA微阵列分析在单个时间点测量的mRNA变化并不能可靠地预测灌注肝脏中的代谢通量变化。