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基于配体结合酶的晶体结构研究细胞色素P450 2B4活性位点残基在底物代谢中的作用。

Investigation of the role of cytochrome P450 2B4 active site residues in substrate metabolism based on crystal structures of the ligand-bound enzyme.

作者信息

Hernandez Cynthia E, Kumar Santosh, Liu Hong, Halpert James R

机构信息

Department of Pharmacology and Toxicology, University of Texas Medical Branch, 301 University Blvd., Galveston, TX 77555-1031, USA.

出版信息

Arch Biochem Biophys. 2006 Nov 1;455(1):61-7. doi: 10.1016/j.abb.2006.08.024. Epub 2006 Sep 25.

DOI:10.1016/j.abb.2006.08.024
PMID:17027909
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1773018/
Abstract

Based on the X-ray crystal structures of 4-(4-chlorophenyl)imidazole (4-CPI)- and bifonazole (BIF)-bound P450 2B4, eight active site mutants at six positions were created in an N-terminal modified construct termed 2B4dH and characterized for enzyme inhibition and catalysis. I363A showed a >4-fold decrease in differential inhibition by BIF and 4-CPI (IC(50,BIF)/IC(50,4-CPI)). F296A, T302A, I363A, V367A, and V477A showed a 2-fold decreased k(cat) for 7-ethoxy-4-trifluoromethylcoumarin O-deethylation, whereas V367A and V477F showed an altered K(m). T302A, V367L, and V477A showed >4-fold decrease in total testosterone hydroxylation, whereas I363A, V367A, and V477F showed altered stereo- and regioselectivity. Interestingly, I363A showed a 150-fold enhanced k(cat)/K(m) with testosterone, and yielded a new metabolite. Furthermore, testosterone docking into three-dimensional models of selected mutants based on the 4-CPI-bound structure suggested a re-positioning of residues 363 and 477 to yield products. In conclusion, our results suggest that the 4-CPI-bound 2B4dH/H226Y crystal structure is an appropriate model for predicting enzyme catalysis.

摘要

基于与4-(4-氯苯基)咪唑(4-CPI)和联苯苄唑(BIF)结合的细胞色素P450 2B4的X射线晶体结构,在一种称为2B4dH的N端修饰构建体中,在六个位置创建了八个活性位点突变体,并对其酶抑制和催化特性进行了表征。I363A对BIF和4-CPI的差异抑制作用(IC(50,BIF)/IC(50,4-CPI))降低了4倍以上。F296A、T302A、I363A、V367A和V477A对7-乙氧基-4-三氟甲基香豆素O-脱乙基反应的催化常数(k(cat))降低了2倍,而V367A和V477F的米氏常数(K(m))发生了改变。T302A、V367L和V477A对总睾酮羟化反应的活性降低了4倍以上,而I363A、V367A和V477F的立体和区域选择性发生了改变。有趣的是,I363A对睾酮的催化常数与米氏常数之比(k(cat)/K(m))提高了150倍,并产生了一种新的代谢产物。此外,基于与4-CPI结合的结构将睾酮对接至所选突变体的三维模型表明,残基363和477重新定位以产生产物。总之,我们的结果表明,与4-CPI结合的2B4dH/H226Y晶体结构是预测酶催化作用的合适模型。

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