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真核生物释放因子3与鸟嘌呤核苷酸相互作用的动力学分析。

Kinetic analysis of interaction of eukaryotic release factor 3 with guanine nucleotides.

作者信息

Pisareva Vera P, Pisarev Andrey V, Hellen Christopher U T, Rodnina Marina V, Pestova Tatyana V

机构信息

Department of Microbiology and Immunology, State University of New York Downstate Medical Center, Brooklyn, New York 11203, USA.

出版信息

J Biol Chem. 2006 Dec 29;281(52):40224-35. doi: 10.1074/jbc.M607461200. Epub 2006 Oct 24.

Abstract

Eukaryotic translation termination is mediated by two release factors: eRF1 recognizes stop codons and triggers peptidyl-tRNA hydrolysis, whereas eRF3 accelerates this process in a GTP-dependent manner. Here we report kinetic analysis of guanine nucleotide binding to eRF3 performed by fluorescence stopped-flow technique using GTP/GDP derivatives carrying the fluorescent methylanthraniloyl (mant-) group, as well as thermodynamic analysis of eRF3 binding to unlabeled guanine nucleotides. Whereas the kinetics of eRF3 binding to mant-GDP is consistent with a one-step binding model, the double-exponential transients of eRF3 binding to mant-GTP indicate a two-step binding mechanism, in which the initial eRF3.mant-GTP complex undergoes subsequent conformational change. The affinity of eRF3 for GTP (K(d), approximately 70 microM) is about 70-fold lower than for GDP (K(d), approximately 1 microM) and both nucleotides dissociate rapidly from eRF3 (k(-1)(mant-GDP) approximately 2.4 s(-1); k(-2)(mant-GTP) approximately 3.3 s(-1)). Whereas not influencing eRF3 binding to GDP, association of eRF3 with eRF1 at physiological Mg(2+) concentrations specifically changes the kinetics of eRF3/mant-GTP interaction and stabilizes eRF3.GTP binding by two orders of magnitude (K(d) approximately 0.7 microM) due to lowering of the dissociation rate constant approximately 24-fold (k(-1)(mant-GTP) approximately 0.14s(-1) approximately 0.14 s(-1)). Thus, eRF1 acts as a GTP dissociation inhibitor (TDI) for eRF3, promoting efficient ribosomal recruitment of its GTP-bound form. 80 S ribosomes did not influence guanine nucleotide binding/exchange on the eRF1 x eRF3 complex. Guanine nucleotide binding and exchange on eRF3, which therefore depends on stimulation by eRF1, is entirely different from that on prokaryotic RF3 and unusual among GTPases.

摘要

真核生物的翻译终止由两种释放因子介导

eRF1识别终止密码子并触发肽基 - tRNA水解,而eRF3以GTP依赖的方式加速这一过程。在此,我们报告了使用携带荧光甲基邻氨基苯甲酰基(mant-)基团的GTP/GDP衍生物,通过荧光停流技术对鸟嘌呤核苷酸与eRF3结合进行的动力学分析,以及eRF3与未标记鸟嘌呤核苷酸结合的热力学分析。虽然eRF3与mant - GDP结合的动力学符合一步结合模型,但eRF3与mant - GTP结合的双指数瞬变表明存在两步结合机制,其中初始的eRF3·mant - GTP复合物会发生后续构象变化。eRF3对GTP的亲和力(K(d),约70 microM)比对GDP的亲和力(K(d),约1 microM)低约70倍,并且两种核苷酸都能快速从eRF3上解离(k(-1)(mant - GDP)约2.4 s(-1);k(-2)(mant - GTP)约3.3 s(-1))。在生理Mg(2+)浓度下,eRF3与eRF1的结合虽不影响eRF3与GDP的结合,但会特异性改变eRF3/mant - GTP相互作用的动力学,并使eRF3·GTP结合稳定两个数量级(K(d)约0.7 microM),这是由于解离速率常数降低了约24倍(k(-1)(mant - GTP)约0.14 s(-1))。因此,eRF1作为eRF3的GTP解离抑制剂(TDI),促进其GTP结合形式在核糖体上的有效募集。80 S核糖体不影响eRF1×eRF3复合物上鸟嘌呤核苷酸的结合/交换。因此,依赖于eRF1刺激的eRF3上的鸟嘌呤核苷酸结合和交换与原核生物RF3上的完全不同,在GTP酶中也不常见。

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