Nekrasov Sergei V, Agafonova Olga V, Belogurova Nataly G, Delver Eugene P, Belogurov Anatol A
Department of Genetic Engineering, National Cardiology Research and Development Center, Moscow 121552, Russia.
J Mol Biol. 2007 Jan 12;365(2):284-97. doi: 10.1016/j.jmb.2006.09.087. Epub 2006 Oct 4.
Many promiscuous plasmids encode the antirestriction proteins ArdA (alleviation of restriction of DNA) that specifically affect the restriction activity of heterooligomeric type I restriction-modification (R-M) systems in Escherichia coli cells. In addition, a lot of the putative ardA genes encoded by plasmids and bacterial chromosomes are found as a result of sequencing of complete genomic sequences, suggesting that ArdA proteins and type I R-M systems that seem to be widespread among bacteria may be involved in the regulation of gene transfer among bacterial genomes. Here, the mechanism of antirestriction action of ArdA encoded by IncI plasmid ColIb-P9 has been investigated in comparison with that of well-studied T7 phage-encoded antirestriction protein Ocr using the mutational analysis, retardation assay and His-tag affinity chromatography. Like Ocr, ArdA protein was shown to be able to efficiently interact with EcoKI R-M complex and affect its in vivo and in vitro restriction activity by preventing its interaction with specific DNA. However, unlike Ocr, ArdA protein has a low binding affinity to EcoKI Mtase and the additional C-terminal tail region (VF-motif) is needed for ArdA to efficiently interact with the type I R-M enzymes. It seems likely that this ArdA feature is a basis for its ability to discriminate between activities of EcoKI Mtase (modification) and complete R-M system (restriction) which may interact with unmodified DNA in the cells independently. These findings suggest that ArdA may provide a very effective and delicate control for the restriction and modification activities of type I systems and its ability to discriminate against DNA restriction in favour of the specific modification of DNA may give some advantage for efficient transmission of the ardA-encoding promiscuous plasmids among different bacterial populations.
许多接合性质粒编码抗限制蛋白ArdA(缓解DNA限制作用),其特异性影响大肠杆菌细胞中异源寡聚体I型限制修饰(R-M)系统的限制活性。此外,通过对完整基因组序列进行测序,发现了许多由质粒和细菌染色体编码的假定ardA基因,这表明ArdA蛋白和似乎在细菌中广泛存在的I型R-M系统可能参与细菌基因组间基因转移的调控。在此,通过突变分析、阻滞试验和His标签亲和色谱法,将IncI质粒ColIb-P9编码的ArdA的抗限制作用机制与已深入研究的T7噬菌体编码的抗限制蛋白Ocr的机制进行了比较。与Ocr一样,ArdA蛋白能够有效地与EcoKI R-M复合物相互作用,并通过阻止其与特定DNA相互作用来影响其体内和体外限制活性。然而,与Ocr不同的是,ArdA蛋白与EcoKI甲基转移酶(Mtase)的结合亲和力较低,ArdA需要额外的C末端尾部区域(VF基序)才能有效地与I型R-M酶相互作用。ArdA的这一特性似乎是其区分EcoKI Mtase(修饰)和完整R-M系统(限制)活性的基础,完整R-M系统可能独立地与细胞中未修饰的DNA相互作用。这些发现表明,ArdA可能对I型系统的限制和修饰活性提供非常有效且精细的控制,其区分DNA限制以利于DNA特定修饰的能力可能为携带ardA的接合性质粒在不同细菌群体间的高效传播提供一些优势。