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原发性成人起病肌张力障碍的遗传学研究规划:基于一级亲属检查的样本量估计

Planning genetic studies on primary adult-onset dystonia: sample size estimates based on examination of first-degree relatives.

作者信息

Defazio Giovanni, Martino Davide, Aniello Maria Stella, Masi Gianluca, Gigante Angelo, Bhatia Kailash, Livrea Paolo, Berardelli Alfredo

机构信息

Department of Neurologic and Psychiatric Sciences, University of Bari, Bari, Italy.

出版信息

J Neurol Sci. 2006 Dec 21;251(1-2):29-34. doi: 10.1016/j.jns.2006.08.009. Epub 2006 Oct 31.

Abstract

Primary adult-onset dystonia is thought to be partly genetic, but families large enough for a genome wide search are difficult to find. We examined the first-degree relatives of 76 primary adult-onset dystonia patients to assess the feasibility of model-free nonparametric methods that allow either screening of candidate loci (case-control design, transmission disequilibrium test [TDT], and sibling-TDT [S-TDT]) or identification of novel genes (affected sib-pair [ASP] method). Among the examined relatives, 1/34 parents, 13/149 siblings and 10/125 offspring were affected by adult-onset dystonia. The predicted sample sizes to detect a gene conferring an Odds ratio of 3.0 were 99 for case-control and TDT methodology, 148 for S-TDT, and 107 to 173 for an ASP study assuming three major loci. Based on our family structure, TDT, S-TDT, and ASP methods would required screening of about 220, 700, and 580 to 939 probands respectively. Analysing subpopulations with different types of dystonia, TDT required fewer probands with cervical/hand dystonia, S-TDT needed fewer probands with cranial dystonia. These sample size estimates suggest that the S-TDT may be feasible, whereas collection of cases for both TDT and ASP approaches would represent a major collaborative challenge.

摘要

原发性成人起病性肌张力障碍被认为部分具有遗传性,但难以找到足够大的家族进行全基因组搜索。我们检查了76例原发性成人起病性肌张力障碍患者的一级亲属,以评估无模型非参数方法的可行性,这些方法可用于筛选候选基因座(病例对照设计、传递不平衡检验[TDT]和同胞TDT[S-TDT])或鉴定新基因(受累同胞对[ASP]方法)。在所检查的亲属中,34名父母中有1名、149名兄弟姐妹中有13名、125名后代中有10名患有成人起病性肌张力障碍。假设存在三个主要基因座,对于病例对照和TDT方法,检测赋予比值比为3.0的基因所需的预测样本量为99,S-TDT为148,ASP研究为107至173。基于我们的家族结构,TDT、S-TDT和ASP方法分别需要筛查约220、700以及580至939名先证者。分析不同类型肌张力障碍的亚组时,TDT筛查颈部/手部肌张力障碍的先证者较少,S-TDT筛查头部肌张力障碍的先证者较少。这些样本量估计表明S-TDT可能可行,而TDT和ASP方法收集病例都将是一项重大的合作挑战。

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