Lee Jae Hyuk, Kim Kyoung Hwan, Kim Tae Kyu, Lee Youhong, Ihee Hyotcherl
Department of Chemistry, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 305-701, Republic of Korea.
J Chem Phys. 2006 Nov 7;125(17):174504. doi: 10.1063/1.2386158.
Extracting transient structural information of a solute from time-resolved x-ray diffraction (TRXD) data is not trivial because the signal from a solution contains not only the solute-only term as in the gas phase, but also solvent-related terms. To obtain structural insights, the diffraction signal in q space is often Fourier sine transformed (FT) into r space, and molecular dynamics (MD) simulation-aided signal decomposition into the solute, cage, and solvent terms has so far been indispensable for a clear-cut assignment of structural features. Here we present a convenient method of comparative structural analysis without involving MD simulations by incorporating only isolated-species models for the solute. FT is applied to both the experimental data and candidate isolated-solute models, and comparison of the correlation factors between the experimental FT and the model FTs can distinguish the best candidate among isolated-solute models for the reaction intermediates. The low q region whose influence by solvent-related terms is relatively high can be further excluded, and this mode of truncated Fourier transform (TFT) improves the correlation factors and facilitates the comparison. TFT analysis has been applied to TRXD data on the photodissociation of C(2)H(4)I(2) in two different solvents (methanol and cyclohexane), HgI(2) in methanol, and I(3) (-) in methanol excited at 267 nm. The results are consistent with previous conclusions for C(2)H(4)I(2) in methanol and HgI(2) in methanol, and the new TRXD data reveal that the C(2)H(4)I transient radical has a bridged structure in cyclohexane and I(3) (-) in methanol decomposes into I+I(2) (-) upon irradiation at 267 nm. This TFT method should greatly simplify the analysis because it bypasses MD simulations.
从时间分辨X射线衍射(TRXD)数据中提取溶质的瞬态结构信息并非易事,因为溶液中的信号不仅包含气相中仅溶质项,还包含与溶剂相关的项。为了获得结构见解,q空间中的衍射信号通常通过傅里叶正弦变换(FT)转换到r空间,到目前为止,分子动力学(MD)模拟辅助将信号分解为溶质、笼和溶剂项对于明确结构特征的归属是不可或缺的。在此,我们提出一种便捷的比较结构分析方法,该方法不涉及MD模拟,仅纳入溶质的孤立物种模型。将FT应用于实验数据和候选孤立溶质模型,通过比较实验FT与模型FT之间的相关因子,可以区分反应中间体的孤立溶质模型中的最佳候选模型。溶剂相关项影响相对较大的低q区域可以进一步排除,这种截断傅里叶变换(TFT)模式提高了相关因子并便于比较。TFT分析已应用于在两种不同溶剂(甲醇和环己烷)中C(2)H(4)I(2)的光解离、甲醇中HgI(2)以及在267 nm激发的甲醇中I(3) (-)的TRXD数据。结果与之前关于甲醇中C(2)H(4)I(2)和甲醇中HgI(2)的结论一致,新的TRXD数据表明,C(2)H(4)I瞬态自由基在环己烷中具有桥连结构,甲醇中的I(3) (-)在267 nm照射下分解为I + I(2) (-)。这种TFT方法应能极大地简化分析,因为它绕过了MD模拟。