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人类FKBP - 12基因的外显子组织:与蛋白质结构和功能域的相关性

Exon organization of the human FKBP-12 gene: correlation with structural and functional protein domains.

作者信息

DiLella A G, Craig R J

机构信息

Department of Molecular Genetics, SmithKline Beecham Pharmaceuticals, King of Prussia, Pennsylvania 19406.

出版信息

Biochemistry. 1991 Sep 3;30(35):8512-7. doi: 10.1021/bi00099a002.

DOI:10.1021/bi00099a002
PMID:1716149
Abstract

FKBP-12, the major T-cell binding protein for the immunosuppressive agents FK506 and rapamycin, catalyzes the interconversion of the cis and trans rotamers of the peptidyl-prolyl amide bond of peptide and protein substrates. The function of rotamase activity in cells and the role of FKBP-12 in immunoregulation is uncertain. In this paper we report the cloning and characterization of the human chromosomal FKBP-12 gene and four processed FKBP-12 pseudogenes. The FKBP-12 gene is 24 kilobases in length and contains five exons. The protein-coding region of the gene is divided into four exon modules that correlate with the structural and functional domains of the protein. The novel structure of FKBP-12 resulting from the topology of the antiparallel beta-sheet is the topological crossing of two loops that are encoded by separate exons. Separate exons also encode the antiparallel beta-sheet and alpha-helical region that define the drug-binding pocket and enzyme activity site of FKBP-12. The exon organization of the FKBP-12 gene also provided insight into the genetic evolution of the immunophilin family. Knowledge of the FKBP-12 gene structure will enable inactivation of this gene by homologous recombination in cells to provide a model to study the role of FKBP-12 in immunoregulation and normal cellular processes.

摘要

FKBP - 12是免疫抑制剂FK506和雷帕霉素的主要T细胞结合蛋白,它催化肽和蛋白质底物的肽基 - 脯氨酰胺键的顺式和反式旋转异构体的相互转化。旋转异构酶活性在细胞中的功能以及FKBP - 12在免疫调节中的作用尚不确定。在本文中,我们报告了人类染色体FKBP - 12基因和四个加工后的FKBP - 12假基因的克隆与特性。FKBP - 12基因长度为24千碱基,包含五个外显子。该基因的蛋白质编码区分为四个外显子模块,与蛋白质的结构和功能域相关。由反平行β折叠拓扑结构产生的FKBP - 12的新结构是由单独外显子编码的两个环的拓扑交叉。单独的外显子还编码定义FKBP - 12药物结合口袋和酶活性位点的反平行β折叠和α螺旋区域。FKBP - 12基因的外显子组织也为亲免素家族的遗传进化提供了见解。了解FKBP - 12基因结构将能够通过细胞中的同源重组使该基因失活,从而提供一个模型来研究FKBP - 12在免疫调节和正常细胞过程中的作用。

相似文献

1
Exon organization of the human FKBP-12 gene: correlation with structural and functional protein domains.人类FKBP - 12基因的外显子组织:与蛋白质结构和功能域的相关性
Biochemistry. 1991 Sep 3;30(35):8512-7. doi: 10.1021/bi00099a002.
2
Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin.人亲免素FKBP-12与FK506及雷帕霉素复合物的原子结构。
J Mol Biol. 1993 Jan 5;229(1):105-24. doi: 10.1006/jmbi.1993.1012.
3
Molecular cloning of a membrane-associated human FK506- and rapamycin-binding protein, FKBP-13.一种膜相关的人类FK506和雷帕霉素结合蛋白FKBP - 13的分子克隆
Proc Natl Acad Sci U S A. 1991 Aug 1;88(15):6677-81. doi: 10.1073/pnas.88.15.6677.
4
Two distinct signal transmission pathways in T lymphocytes are inhibited by complexes formed between an immunophilin and either FK506 or rapamycin.亲免蛋白与FK506或雷帕霉素形成的复合物会抑制T淋巴细胞中两条不同的信号转导途径。
Proc Natl Acad Sci U S A. 1990 Dec;87(23):9231-5. doi: 10.1073/pnas.87.23.9231.
5
Solution structure of FKBP, a rotamase enzyme and receptor for FK506 and rapamycin.FKBP的溶液结构,一种肽基脯氨酰顺反异构酶以及FK506和雷帕霉素的受体。
Science. 1991 May 10;252(5007):836-9. doi: 10.1126/science.1709301.
6
Complementary DNA encoding the human T-cell FK506-binding protein, a peptidylprolyl cis-trans isomerase distinct from cyclophilin.编码人T细胞FK506结合蛋白的互补DNA,一种不同于亲环蛋白的肽基脯氨酰顺反异构酶。
Proc Natl Acad Sci U S A. 1990 Jul;87(14):5440-3. doi: 10.1073/pnas.87.14.5440.
7
Proton and nitrogen sequential assignments and secondary structure determination of the human FK506 and rapamycin binding protein.
Biochemistry. 1991 May 14;30(19):4774-89. doi: 10.1021/bi00233a020.
8
Complete amino acid sequence of the FK506 and rapamycin binding protein, FKBP, isolated from calf thymus.从小牛胸腺中分离出的FK506和雷帕霉素结合蛋白FKBP的完整氨基酸序列。
J Protein Chem. 1991 Apr;10(2):151-60. doi: 10.1007/BF01024778.
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Chromosomal assignment of the human immunophilin FKBP-12 gene.
Biochem Biophys Res Commun. 1991 Sep 30;179(3):1427-33. doi: 10.1016/0006-291x(91)91732-r.
10
Mechanism for the rotamase activity of FK506 binding protein from molecular dynamics simulations.基于分子动力学模拟的FK506结合蛋白旋转异构酶活性机制
Biochemistry. 1993 Nov 30;32(47):12864-74. doi: 10.1021/bi00210a040.

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New nucleotide sequence data on the EMBL File Server.欧洲分子生物学实验室文件服务器上的新核苷酸序列数据。
Nucleic Acids Res. 1991 Dec 25;19(24):6985-99. doi: 10.1093/nar/19.24.6985.