Dorazi Robert, Götz Dorothee, Munro Stacey, Bernander Rolf, White Malcolm F
Centre for Biomolecular Sciences, University of St Andrews, St Andrews, Fife KY16 9ST, UK.
Mol Microbiol. 2007 Jan;63(2):521-9. doi: 10.1111/j.1365-2958.2006.05516.x. Epub 2006 Dec 5.
The nucleotide excision repair (NER) pathway removes bulky lesions such as photoproducts from DNA. In both bacteria and eukarya, lesions located in transcribed strands are repaired significantly faster than those located in non-transcribed strands due to damage signalling by stalled RNA polymerase molecules: a phenomenon known as transcription-coupled repair (TCR). TCR requires a mechanism for coupling the detection of stalled RNA polymerase molecules to the NER pathway, provided in bacteria by the Mfd protein. In the third domain of life, archaea, the pathway of NER is not well defined, there are no Mfd homologues and the existence of TCR has not been investigated. In this report we looked at rates of removal of photoproducts in three different operons of the crenarchaeon Sulfolobus solfataricus following UV irradiation. We found no evidence for significantly faster repair in the transcribed strands of these three operons. The rate of global genome repair in S. solfataricus is relatively rapid, and this may obviate the requirement for a specialized TCR pathway. Significantly faster repair kinetics were observed in the presence of visible light, consistent with the presence of a gene for photolyase in the genome of S. solfataricus.
核苷酸切除修复(NER)途径可从DNA中去除诸如光产物等大分子损伤。在细菌和真核生物中,由于停滞的RNA聚合酶分子发出的损伤信号,转录链上的损伤修复速度明显快于非转录链上的损伤:这种现象称为转录偶联修复(TCR)。TCR需要一种将停滞的RNA聚合酶分子的检测与NER途径偶联的机制,在细菌中由Mfd蛋白提供。在生命的第三个域古菌中,NER途径尚未明确界定,没有Mfd同源物,并且尚未研究TCR的存在。在本报告中,我们研究了紫外线照射后嗜热栖热菌三个不同操纵子中光产物的去除率。我们没有发现这三个操纵子的转录链中有明显更快修复的证据。嗜热栖热菌的全基因组修复速度相对较快,这可能消除了对专门的TCR途径的需求。在可见光存在下观察到明显更快的修复动力学,这与嗜热栖热菌基因组中存在光解酶基因一致。