Jurecka Petr, Cerný Jirí, Hobza Pavel, Salahub Dennis R
Department of Chemistry, University of Calgary, 2500 University Drive NW Calgary, Alberta, Canada T2N 1N4.
J Comput Chem. 2007 Jan 30;28(2):555-69. doi: 10.1002/jcc.20570.
Standard density functional theory (DFT) is augmented with a damped empirical dispersion term. The damping function is optimized on a small, well balanced set of 22 van der Waals (vdW) complexes and verified on a validation set of 58 vdW complexes. Both sets contain biologically relevant molecules such as nucleic acid bases. Results are in remarkable agreement with reference high-level wave function data based on the CCSD(T) method. The geometries obtained by full gradient optimization are in very good agreement with the best available theoretical reference. In terms of the standard deviation and average errors, results including the empirical dispersion term are clearly superior to all pure density functionals investigated-B-LYP, B3-LYP, PBE, TPSS, TPSSh, and BH-LYP-and even surpass the MP2/cc-pVTZ method. The combination of empirical dispersion with the TPSS functional performs remarkably well. The most critical part of the empirical dispersion approach is the damping function. The damping parameters should be optimized for each density functional/basis set combination separately. To keep the method simple, we optimized mainly a single factor, s(R), scaling globally the vdW radii. For good results, a basis set of at least triple-zeta quality is required and diffuse functions are recommended, since the basis set superposition error seriously deteriorates the results. On average, the dispersion contribution to the interaction energy missing in the DFT functionals examined here is about 15 and 100% for the hydrogen-bonded and stacked complexes considered, respectively.
标准密度泛函理论(DFT)通过一个阻尼经验色散项得到增强。阻尼函数在一组精心平衡的22个范德华(vdW)复合物的小集合上进行了优化,并在一个包含58个vdW复合物的验证集上进行了验证。这两个集合都包含了诸如核酸碱基等与生物学相关的分子。结果与基于CCSD(T)方法的参考高水平波函数数据显著一致。通过全梯度优化得到的几何结构与最佳可用理论参考非常吻合。就标准偏差和平均误差而言,包含经验色散项的结果明显优于所有研究的纯密度泛函——B-LYP、B3-LYP、PBE、TPSS、TPSSh和BH-LYP——甚至超过了MP2/cc-pVTZ方法。经验色散与TPSS泛函的组合表现非常出色。经验色散方法最关键的部分是阻尼函数。阻尼参数应该针对每个密度泛函/基组组合分别进行优化。为了保持方法简单,我们主要优化了一个单一因子s(R),它全局缩放vdW半径。为了获得良好的结果,需要至少三重ζ质量的基组,并且建议使用弥散函数,因为基组叠加误差会严重恶化结果。平均而言,对于这里考虑的氢键复合物和堆积复合物,本文研究的DFT泛函中缺失的相互作用能的色散贡献分别约为15%和100%。