Ravindra Gudihal, Ranganayaki Rappal S, Raghothama Srinivasa, Srinivasan Mandayam C, Gilardi Richard D, Karle Isabella L, Balaram Padmanabhan
Molecular Biophysics Unit, Indian Institute of Science, Bangalore-560012, India.
Chem Biodivers. 2004 Mar;1(3):489-504. doi: 10.1002/cbdv.200490043.
Two new cyclohexadepsipeptides have been isolated from the fungus Isaria. Fungal growth in solid media yielded hyphal strands from which peptide fractions were readily isolable by organic-solvent extraction. Two novel cyclodepsipeptides, isaridin A and isaridin B, have been isolated by reverse-phase HPLC, and characterized by ESI-MS and 1H-NMR. Single crystals of both peptides have been obtained, and their 3D structures were elucidated by X-ray diffraction. The isaridins contain several unusual amino acid residues. The sequences are cyclo(beta-Gly-HyLeu-Pro-Phe-NMeVal-NMePhe) and cyclo(beta-Gly-HyLeu-beta-MePro-Phe-NMeVal-NMePhe), where NMeVal is N-methylvaline, NMePhe N-methylphenylalanine, and HyLeu hydroxyleucine (= 2-hydroxy-4-methylpentanoic acid). The two peptides differ from one another at residue 3, isaridin A having an (S)-proline at this position, while beta-methyl-(S)-proline (= (2S,3S)-2,3,4,5-tetrahydro-3-methyl-1H-pyrrole-2-carboxylic acid) is found in isaridin B. The solid-state conformations of both cyclic depsipeptides are characterized by the presence of two cis peptide bonds at HyLeu(2)-Pro(3)/HyLeu(2)-beta-MePro(3) and NMeVal(5)-NMePhe(6), respectively. In isaridin A, a strong intramolecular H-bond is observed between Phe(4)CO...HNbeta-Gly(1), and a similar, but weaker, interaction is observed between beta-Gly(1)CO...HNPhe(4). In contrast, in isaridin B, only a single intramolecular H-bond is observed between beta-Gly(1)CO...HNPhe(4).
从真菌棒束孢中分离出了两种新的环缩肽。在固体培养基中真菌生长产生了菌丝束,通过有机溶剂萃取可轻松从其中分离出肽级分。通过反相高效液相色谱法分离出了两种新型环缩肽,异棒束孢菌素A和异棒束孢菌素B,并通过电喷雾电离质谱法和1H-核磁共振进行了表征。已获得这两种肽的单晶,并通过X射线衍射阐明了它们的三维结构。异棒束孢菌素含有几个不寻常的氨基酸残基。其序列分别为环(β-甘氨酸-羟基亮氨酸-脯氨酸-苯丙氨酸-N-甲基缬氨酸-N-甲基苯丙氨酸)和环(β-甘氨酸-羟基亮氨酸-β-甲基脯氨酸-苯丙氨酸-N-甲基缬氨酸-N-甲基苯丙氨酸),其中N-甲基缬氨酸是N-甲基缬氨酸,N-甲基苯丙氨酸是N-甲基苯丙氨酸,羟基亮氨酸是羟亮氨酸(= 2-羟基-4-甲基戊酸)。这两种肽在第3位残基处有所不同,异棒束孢菌素A在该位置具有(S)-脯氨酸,而异棒束孢菌素B中则发现β-甲基-(S)-脯氨酸(=(2S,3S)-2,3,4,5-四氢-3-甲基-1H-吡咯-2-羧酸)。两种环缩肽的固态构象分别以在羟亮氨酸(2)-脯氨酸(3)/羟亮氨酸(2)-β-甲基脯氨酸(3)和N-甲基缬氨酸(5)-N-甲基苯丙氨酸(6)处存在两个顺式肽键为特征。在异棒束孢菌素A中,观察到苯丙氨酸(4)羰基...HNβ-甘氨酸(1)之间有一个强分子内氢键,并且在β-甘氨酸(1)羰基...HNPhe(4)之间观察到类似但较弱的相互作用。相比之下,在异棒束孢菌素B中,仅在β-甘氨酸(1)羰基...HNPhe(4)之间观察到一个单一的分子内氢键。