Sarma Siddhartha P, Kumar G Senthil, Sudarslal S, Iengar Prathima, Ramasamy P, Sikdar Sujit K, Krishnan K S, Balaram Padmanabhan
Molecular Biophysics Unit, Indian Institute of Science, Bangalore, Karnataka-560012, India.
Chem Biodivers. 2005 Apr;2(4):535-56. doi: 10.1002/cbdv.200590035.
The three-dimensional (3D) NMR solution structure (MeOH) of the highly hydrophobic delta-conotoxin delta-Am2766 from the molluscivorous snail Conus amadis has been determined. Fifteen converged structures were obtained on the basis of 262 distance constraints, 25 torsion-angle constraints, and ten constraints based on disulfide linkages and H-bonds. The root-mean-square deviations (rmsd) about the averaged coordinates of the backbone (N, C(alpha), C) and (all) heavy atoms were 0.62+/-0.20 and 1.12+/-0.23 A, respectively. The structures determined are of good stereochemical quality, as evidenced by the high percentage (100%) of backbone dihedral angles that occupy favorable and additionally allowed regions of the Ramachandran map. The structure of delta-Am2766 consists of a triple-stranded antiparallel beta-sheet, and of four turns. The three disulfides form the classical 'inhibitory cysteine knot' motif. So far, only one tertiary structure of a delta-conotoxin has been reported; thus, the tertiary structure of delta-Am2766 is the second such example. Another Conus peptide, Am2735 from C. amadis, has also been purified and sequenced. Am2735 shares 96% sequence identity with delta-Am2766. Unlike delta-Am2766, Am2735 does not inhibit the fast inactivation of Na+ currents in rat brain Na(v)1.2 Na+ channels at concentrations up to 200 nM.
已确定来自食蜗锥螺Conus amadis的高度疏水的δ-芋螺毒素δ-Am2766的三维(3D)核磁共振溶液结构(甲醇)。基于262个距离约束、25个扭转角约束以及基于二硫键和氢键的10个约束,获得了15个收敛结构。主链(N、Cα、C)和(所有)重原子的平均坐标的均方根偏差(rmsd)分别为0.62±0.20 Å和1.12±0.23 Å。所确定的结构具有良好的立体化学质量,这一点可由占据拉氏图有利和额外允许区域的主链二面角的高百分比(100%)证明。δ-Am2766的结构由一个三链反平行β-折叠片和四个转角组成。三个二硫键形成经典的“抑制性半胱氨酸结”基序。到目前为止,仅报道了一种δ-芋螺毒素的三级结构;因此,δ-Am2766的三级结构是第二个此类实例。另一种来自C. amadis的芋螺肽Am2735也已被纯化和测序。Am2735与δ-Am2766的序列同一性为96%。与δ-Am2766不同,在浓度高达200 nM时,Am2735不会抑制大鼠脑Na(v)1.2 Na+通道中Na+电流的快速失活。