van Mourik Tanja, Dingley Andrew J
Chemistry Department, University College London, 20 Gordon Street, London WC1H 0AJ, UK.
Chemphyschem. 2007 Feb 2;8(2):288-96. doi: 10.1002/cphc.200600489.
There have been numerous theoretical and experimental investigations examining NMR parameters related to non-amino N-H...N H-bonded moieties in both biological and chemical contexts. In contrast, little information on the geometry dependence of NMR parameters related to the biologically important H-bond donor amino group is available. Herein, the geometric dependencies of the one-bond amino N-H spin-spin coupling constants [(1)J(NH)] in the cyanamide monomer and dimer have been computed with B3LYP and the aug-cc-pVTZ-su0 basis set. In an isolated planar cyanamide molecule, the |(1)J(NH)| couplings were found to increase as the N-H bond lengthened. In contrast, in the planar cyanamide dimer the size of the H-bonded amino N-H coupling (|(1)J(N(d)H(d))|) decreased with increasing N(d)H(d) bond length. The |(1)J(N(d)H(d))| coupling was larger than the |(1)J(N(d)H(free))| coupling for N(d)H(d) distances up to 1.18 A (for a fixed N(d)H(free) distance of 1.006 A). Hence, the decrease of |(1)J(NH)| with increasing N-H distance, as well as the larger value of |(1)J(N(d)H(d))| compared to |(1)J(N(d)H(free))|, were only observed for situations where the amino group is involved in an H-bonding interaction. This is attributed to electron redistribution induced by the presence of the second cyanamide molecule. Similar electron-redistribution effects are thought to be responsible for the observed distance dependence of computed (1)J(NH) couplings of H-bonded amino groups in near-planar G-quartet structures. Here, the |(1)J(NH)| couplings of the amino N-H bonds decreased with increasing N-H bond length whereas the |(1)J(N(d)H(d))| couplings are approximately 7 Hz larger than the |(1)J(N(d)H(free))| couplings, despite the longer N(d)-H(d) bond length.
在生物和化学环境中,已经有大量的理论和实验研究考察了与非氨基N-H...N氢键部分相关的核磁共振(NMR)参数。相比之下,关于与生物学上重要的氢键供体氨基相关的NMR参数的几何依赖性的信息却很少。在此,使用B3LYP和aug-cc-pVTZ-su0基组计算了氰胺单体和二聚体中一键氨基N-H自旋-自旋耦合常数[(1)J(NH)]的几何依赖性。在一个孤立的平面氰胺分子中,发现|(1)J(NH)|耦合随着N-H键的延长而增加。相反,在平面氰胺二聚体中,氢键连接的氨基N-H耦合(|(1)J(N(d)H(d))|)的大小随着N(d)H(d)键长的增加而减小。对于N(d)H(d)距离达到1.18 Å(对于固定的N(d)H(自由)距离为1.006 Å),|(1)J(N(d)H(d))|耦合大于|(1)J(N(d)H(自由))|耦合。因此,只有在氨基参与氢键相互作用的情况下,才观察到|(1)J(NH)|随着N-H距离增加而减小,以及|(1)J(N(d)H(d))|相比于|(1)J(N(d)H(自由))|具有更大的值。这归因于第二个氰胺分子的存在引起的电子重新分布。类似的电子重新分布效应被认为是导致在近平面G-四重结构中观察到的氢键连接氨基的计算(1)J(NH)耦合的距离依赖性的原因。在这里,氨基N-H键的|(1)J(NH)|耦合随着N-H键长的增加而减小,而|(1)J(N(d)H(d))|耦合比|(1)J(N(d)H(自由))|耦合大约大7 Hz,尽管N(d)-H(d)键长更长。