Biely Peter, Mastihubová Mária, Puchart Vladimír
Institute of Chemistry, Slovak Academy of Sciences, Dúbravská cesta 9, SK-845 38 Bratislava, Slovakia.
Biochim Biophys Acta. 2007 Apr;1770(4):565-70. doi: 10.1016/j.bbagen.2006.12.005. Epub 2006 Dec 21.
Positional specificity of NodB-like domain of a multidomain xylanase U from Clostridium thermocellum (CtAxe) was investigated. Of three monoacetates of 4-nitrophenyl beta-d-xylopyranoside the acetylxylan esterase domain showed a clear preference for the 2-acetate. Moreover, the enzyme was significantly activated by Co(2+). Acetylated methyl beta-d-xylopyranosides were deacetylated slightly better at position 3 than at position 2, suggesting that the enzyme binds the substrate with the small methyl aglycone also in the opposite orientation. Nevertheless, both positions 2 and 3 of methyl beta-d-xylopyranoside were deacetylated much faster in the presence of the activating metal ion. In contrast, replacement of the hydroxyl group at either of these positions with fluorine or hydrogen, as well as acetylation of both positions, abolished the enzyme activity, regardless the absence or the presence of Co(2+). Thus, the presence of the free vicinal hydroxyl group seems to be a prerequisite not only for an efficient deacetylation of position 2 or 3, but also for the activation of the enzyme with cobalt ion. The demonstrated involvement of the vicinal hydroxyl groups in the mechanism of deacetylation is in accord with 3-D structures of CtAxe as well as other CE4 metal-dependent deacetylases.
研究了来自热纤梭菌的多结构域木聚糖酶U(CtAxe)的NodB样结构域的位置特异性。在4-硝基苯基β-D-吡喃木糖苷的三种单乙酸酯中,乙酰木聚糖酯酶结构域对2-乙酸酯表现出明显的偏好。此外,该酶被Co(2+)显著激活。乙酰化的甲基β-D-吡喃木糖苷在3位的脱乙酰化略好于2位,这表明该酶与带有小甲基糖苷配基的底物结合时也存在相反的取向。然而,在存在激活金属离子的情况下,甲基β-D-吡喃木糖苷的2位和3位的脱乙酰化速度都快得多。相比之下,用氟或氢取代这些位置上的任何一个羟基,以及对两个位置进行乙酰化,都会使酶活性丧失,无论是否存在Co(2+)。因此,游离邻位羟基的存在似乎不仅是2位或3位高效脱乙酰化的先决条件,也是钴离子激活该酶的先决条件。所证明的邻位羟基参与脱乙酰化机制与CtAxe以及其他CE4金属依赖性脱乙酰酶的三维结构一致。