载脂蛋白(a)的kringle IV型8模块的核磁共振(NMR)溶液结构、动力学及结合特性

Nuclear magnetic resonance (NMR) solution structure, dynamics, and binding properties of the kringle IV type 8 module of apolipoprotein(a).

作者信息

Chitayat Seth, Kanelis Voula, Koschinsky Marlys L, Smith Steven P

机构信息

Department of Biochemistry, Queen's University, Kingston, Ontario K7L 3N6, Canada.

出版信息

Biochemistry. 2007 Feb 20;46(7):1732-42. doi: 10.1021/bi061814g. Epub 2007 Jan 31.

Abstract

The plasma lipoprotein lipoprotein(a) [Lp(a)] comprises a low-density lipoprotein (LDL)-like particle covalently attached to the glycoprotein apolipoprotein(a) [apo(a)]. Apo(a) consists of multiple tandem repeating kringle modules, similar to plasminogen kringle IV (designated KIV1-KIV10), followed by modules homologous to the kringle V module and protease domain of plasminogen. The apo(a) KIV modules have been classified on the basis of their binding affinity for lysine and lysine analogues. The strong lysine-binding apo(a) KIV10 module mediates lysine-dependent interactions with fibrin and cell-surface receptors. Weak lysine-binding apo(a) KIV7 and KIV8 modules display a 2-3-fold difference in lysine affinity and play a direct role in the noncovalent step in Lp(a) assembly through binding to unique lysine-containing sequences in apolipoproteinB-100 (apoB-100). The present study describes the nuclear magnetic resonance solution structure of apo(a) KIV8 and its solution dynamics properties, the first for an apo(a) kringle module, and compares the effects of epsilon-aminocaproic acid (epsilon-ACA) binding on the backbone and side-chain conformation of KIV7 and KIV8 on a per residue basis. Apo(a) KIV8 adopts a well-ordered structure that shares the general tri-loop kringle topology with apo(a) KIV6, KIV7, and KIV10. Mapping of epsilon-ACA-induced chemical-shift changes on KIV7 and KIV8 indicate that the same residues are affected, despite a 2-3-fold difference in epsilon-ACA affinity. A unique loop conformation within KIV8, involving hydrophobic interactions with Tyr40, affects the positioning of Arg35 relative to the lysine-binding site (LBS). A difference in the orientation of the aromatic side chains comprising the hydrophobic center of the LBS in KIV8 decreases the size of the hydrophobic cleft compared to other apo(a) KIV modules. An exposed hydrophobic patch contiguous with the LBS in KIV8 and not conserved in other weak lysine-binding apo(a) kringle modules may modulate specificity for regions within apoB-100. An additional ligand recognition site comprises a structured arginine-glycine-aspartate motif at the N terminus of the KIV8 module, which may mediate Lp(a)/apo(a)-integrin interactions.

摘要

血浆脂蛋白(a)[Lp(a)]由一个与糖蛋白载脂蛋白(a)[apo(a)]共价连接的低密度脂蛋白(LDL)样颗粒组成。Apo(a)由多个串联重复的kringle模块组成,类似于纤溶酶原kringle IV(命名为KIV1-KIV10),随后是与纤溶酶原kringle V模块和蛋白酶结构域同源的模块。Apo(a)的KIV模块已根据它们对赖氨酸和赖氨酸类似物的结合亲和力进行了分类。强赖氨酸结合的apo(a)KIV10模块介导与纤维蛋白和细胞表面受体的赖氨酸依赖性相互作用。弱赖氨酸结合的apo(a)KIV7和KIV8模块在赖氨酸亲和力上有2-3倍的差异,并通过与载脂蛋白B-100(apoB-100)中独特的含赖氨酸序列结合,在Lp(a)组装的非共价步骤中发挥直接作用。本研究描述了apo(a)KIV8的核磁共振溶液结构及其溶液动力学性质,这是首个关于apo(a)kringle模块的研究,并逐个残基地比较了ε-氨基己酸(ε-ACA)结合对KIV7和KIV8主链和侧链构象的影响。Apo(a)KIV8采用一种有序的结构,与apo(a)KIV6、KIV7和KIV10共享一般的三环kringle拓扑结构。ε-ACA诱导的KIV7和KIV8化学位移变化图谱表明,尽管ε-ACA亲和力有2-3倍的差异,但受影响的残基相同。KIV8内一个独特的环构象,涉及与Tyr40的疏水相互作用,影响了Arg35相对于赖氨酸结合位点(LBS)的定位。与其他apo(a)KIV模块相比,KIV8中构成LBS疏水中心的芳香族侧链方向的差异减小了疏水裂缝的大小。KIV8中与LBS相邻且在其他弱赖氨酸结合的apo(a)kringle模块中不保守地暴露疏水补丁可能调节对apoB-100内区域的特异性。另一个配体识别位点在KIV8模块的N端包含一个结构化的精氨酸-甘氨酸-天冬氨酸基序,它可能介导Lp(a)/apo(a)-整合素相互作用。

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