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界定种群边界:运用三种贝叶斯方法及来自英国黄条蟾蜍(Bufo calamita)的微卫星数据

Defining population boundaries: use of three Bayesian approaches with microsatellite data from British natterjack toads (Bufo calamita).

作者信息

Rowe G, Beebee T J C

机构信息

School of Life Sciences, University of Sussex, Falmer, Brighton BN1 9QG, UK.

出版信息

Mol Ecol. 2007 Feb;16(4):785-96. doi: 10.1111/j.1365-294X.2006.03188.x.

Abstract

Defining boundaries between populations is often difficult in the absence of information about current levels of gene flow. Such definitions can be important, however, both for the understanding of population dynamics and for conservation planning. Recently developed Bayesian methods for analysing genetic data now provide a powerful approach to this problem. Natterjack toads Bufo calamita are endangered in Britain, where their distribution is restricted to four geographically discrete regions. In three of these regions the boundaries between populations are often uncertain. We therefore used Bayesian approaches with microsatellite data to try and define British natterjack population structure, and thus inform conservation management. A large sample of natterjack toads from all 38 locations in Britain where the species is native was genotyped at eight microsatellite loci. The genetic diversity of natterjack populations declined as a function of increasing latitude, echoing postglacial colonization dynamics. Comparisons of three assignment methods (structure, baps and geneland) generated some broad similarities but also some inconsistencies in the definitions of population structure, especially in the most complex region (south Cumbria). Implications of the analyses for the future conservation of Bufo calamita in Britain are discussed.

摘要

在缺乏当前基因流动水平信息的情况下,界定种群之间的界限通常很困难。然而,这样的界定对于理解种群动态和保护规划都可能很重要。最近开发的用于分析遗传数据的贝叶斯方法,现在为解决这个问题提供了一个强有力的途径。黄条蟾蜍在英国面临濒危,其分布仅限于四个地理上离散的区域。在其中三个区域,种群之间的界限往往不明确。因此,我们使用贝叶斯方法和微卫星数据来尝试界定英国黄条蟾蜍的种群结构,从而为保护管理提供依据。对来自英国本土该物种所有38个地点的大量黄条蟾蜍样本,在八个微卫星位点进行了基因分型。黄条蟾蜍种群的遗传多样性随着纬度升高而下降,这与冰期后殖民动态相呼应。三种赋值方法(structure、baps和geneland)的比较产生了一些大致相似之处,但在种群结构的界定上也存在一些不一致,特别是在最复杂的区域(坎布里亚郡南部)。讨论了这些分析对英国黄条蟾蜍未来保护的意义。

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