• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

对来自假结核耶尔森菌的CDP-6-脱氧-D-甘油-L-苏-4-己酮糖-3-脱水酶(E1)的逆向进化研究:对3,6-二脱氧己糖生物合成中C-3脱氧作用的启示

A retro-evolution study of CDP-6-deoxy-D-glycero-L-threo-4-hexulose-3-dehydrase (E1) from Yersinia pseudotuberculosis: implications for C-3 deoxygenation in the biosynthesis of 3,6-dideoxyhexoses.

作者信息

Wu Qingquan, Liu Yung-Nan, Chen Huawei, Molitor Erich J, Liu Hung-wen

机构信息

Division of Medicinal Chemistry, College of Pharmacy, and Department of Chemistry and Biochemistry, University of Texas, Austin, Texas 78712, USA.

出版信息

Biochemistry. 2007 Mar 27;46(12):3759-67. doi: 10.1021/bi602352g. Epub 2007 Feb 27.

DOI:10.1021/bi602352g
PMID:17323931
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2515278/
Abstract

CDP-6-deoxy-l-threo-d-glycero-4-hexulose-3-dehydrase (E1), which catalyzes C-3 deoxygenation of CDP-4-keto-6-deoxyglucose in the biosynthesis of 3,6-dideoxyhexoses, shares a modest sequence identity with other B6-dependent enzymes, albeit with two important distinctions. It is a rare example of a B6-dependent enzyme that harbors a [2Fe-2S] cluster, and a highly conserved lysine that serves as an anchor for PLP in most B6-dependent enzymes is replaced by histidine at position 220 in E1. Since alteration of His220 to a lysine residue may produce a putative progenitor of E1, the H220K mutant was constructed and tested for the ability to process the predicted substrate, CDP-4-amino-4,6-dideoxyglucose, using PLP as the coenzyme. Our data showed that H220K-E1 has no dehydrase activity, but can act as a PLP-dependent transaminase. However, the reaction is not catalytic since PLP cannot be regenerated during turnover. Reported herein are the results of this investigation and the implications for the role of His220 in the catalytic mechanism of E1.

摘要

CDP-6-脱氧-L-苏式-D-甘油-4-己酮糖-3-脱水酶(E1)在3,6-二脱氧己糖的生物合成中催化CDP-4-酮-6-脱氧葡萄糖的C-3脱氧反应,它与其他依赖维生素B6的酶有一定程度的序列同源性,不过存在两个重要区别。它是罕见的含有[2Fe-2S]簇的依赖维生素B6的酶的例子,并且在大多数依赖维生素B6的酶中作为磷酸吡哆醛(PLP)锚定位点的一个高度保守的赖氨酸在E1中被第220位的组氨酸取代。由于将His220改变为赖氨酸残基可能产生E1的假定祖先,因此构建了H220K突变体,并测试了其以PLP作为辅酶处理预测底物CDP-4-氨基-4,6-二脱氧葡萄糖的能力。我们的数据表明,H220K-E1没有脱水酶活性,但可以作为依赖PLP的转氨酶起作用。然而,该反应不具有催化性,因为在周转过程中PLP无法再生。本文报道了这项研究的结果以及His220在E1催化机制中的作用的相关推论。

相似文献

1
A retro-evolution study of CDP-6-deoxy-D-glycero-L-threo-4-hexulose-3-dehydrase (E1) from Yersinia pseudotuberculosis: implications for C-3 deoxygenation in the biosynthesis of 3,6-dideoxyhexoses.对来自假结核耶尔森菌的CDP-6-脱氧-D-甘油-L-苏-4-己酮糖-3-脱水酶(E1)的逆向进化研究:对3,6-二脱氧己糖生物合成中C-3脱氧作用的启示
Biochemistry. 2007 Mar 27;46(12):3759-67. doi: 10.1021/bi602352g. Epub 2007 Feb 27.
2
Studies of the redox properties of CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase (E1) and CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase (E3): two important enzymes involved in the biosynthesis of ascarylose.CDP-6-脱氧-L-苏式-D-甘油-4-己酮糖-3-脱水酶(E1)和CDP-6-脱氧-L-苏式-D-甘油-4-己酮糖-3-脱水酶还原酶(E3)的氧化还原性质研究:参与鼠李糖生物合成的两种重要酶
Biochemistry. 1996 Jun 18;35(24):7879-89. doi: 10.1021/bi960284t.
3
Identification of an unusual [2Fe-2S]-binding motif in the CDP-6-deoxy-D-glycero-l-threo-4-hexulose-3-dehydrase from Yersinia pseudotuberculosis: implication for C-3 deoxygenation in the biosynthesis of 3,6-dideoxyhexoses.在假结核耶尔森菌的CDP-6-脱氧-D-甘油-L-苏糖-4-己酮糖-3-脱水酶中鉴定出一种不寻常的[2Fe-2S]结合基序:对3,6-二脱氧己糖生物合成中C-3脱氧作用的影响。
Biochemistry. 2004 Nov 9;43(44):14265-74. doi: 10.1021/bi048841w.
4
Structure and mutagenic conversion of E1 dehydrase: at the crossroads of dehydration, amino transfer, and epimerization.E1脱水酶的结构与诱变转化:处于脱水、氨基转移和差向异构化的交叉点
Biochemistry. 2008 Jun 17;47(24):6329-41. doi: 10.1021/bi702449p. Epub 2008 May 21.
5
Biosynthesis of 3,6-dideoxyhexoses: in vivo and in vitro evidence for protein-protein interaction between CDP-6-deoxy-L-threo-D-glycero-4-hexulose 3-dehydrase (E1) and its reductase (E3).3,6-二脱氧己糖的生物合成:CDP-6-脱氧-L-苏式-D-甘油-4-己酮糖3-脱水酶(E1)与其还原酶(E3)之间蛋白质-蛋白质相互作用的体内和体外证据。
Biochemistry. 1996 Dec 24;35(51):16412-20. doi: 10.1021/bi961921i.
6
Biosynthesis of a 3,6-dideoxyhexose: crystallization and X-ray diffraction of CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase (E1) for ascarylose biosynthesis.一种3,6-二脱氧己糖的生物合成:用于阿糖胺糖生物合成的CDP-6-脱氧-L-苏式-D-甘油-4-己酮糖-3-脱水酶(E1)的结晶及X射线衍射
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Mar 1;62(Pt 3):231-4. doi: 10.1107/S1744309106003721. Epub 2006 Feb 10.
7
Mechanistic studies on CDP-6-deoxy-L-threo-D-glycero-4-hexulose 3-dehydrase identification of His-220 as the active-site base by chemical modification and site-directed mutagenesis.关于CDP-6-脱氧-L-苏- D-甘油-4-己酮糖3-脱水酶的机制研究:通过化学修饰和定点诱变鉴定His-220为活性位点碱基
Biochemistry. 1995 Apr 11;34(14):4643-54. doi: 10.1021/bi00014a018.
8
Studies of the biosynthesis of 3,6-dideoxyhexoses: molecular cloning and characterization of the asc (ascarylose) region from Yersinia pseudotuberculosis serogroup VA.
J Bacteriol. 1994 Sep;176(17):5483-93. doi: 10.1128/jb.176.17.5483-5493.1994.
9
Kinetics of the reductive half-reaction of the iron-sulfur flavoenzyme CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase.铁硫黄素酶CDP-6-脱氧-L-苏式-D-甘油-4-己酮糖-3-脱水酶还原酶还原半反应的动力学
Biochemistry. 1996 Jun 18;35(24):7752-61. doi: 10.1021/bi960217z.
10
Mechanistic and stereochemical studies of a unique dehydration catalyzed by CDP-4-keto-6-deoxy-D-glucose-3-dehydrase: a pyridoxamine 5'-phosphate dependent enzyme isolated from Yersinia pseudotuberculosis.CDP-4-酮-6-脱氧-D-葡萄糖-3-脱水酶催化的独特脱水反应的机理和立体化学研究:一种从假结核耶尔森菌中分离出的依赖磷酸吡哆胺5'-磷酸的酶
Biochemistry. 1992 Feb 25;31(7):2140-7. doi: 10.1021/bi00122a035.

引用本文的文献

1
Mechanisms and structures of vitamin B(6)-dependent enzymes involved in deoxy sugar biosynthesis.参与脱氧糖生物合成的维生素B6依赖性酶的机制与结构
Biochim Biophys Acta. 2011 Nov;1814(11):1534-47. doi: 10.1016/j.bbapap.2011.02.003. Epub 2011 Feb 21.
2
Structure and mutagenic conversion of E1 dehydrase: at the crossroads of dehydration, amino transfer, and epimerization.E1脱水酶的结构与诱变转化:处于脱水、氨基转移和差向异构化的交叉点
Biochemistry. 2008 Jun 17;47(24):6329-41. doi: 10.1021/bi702449p. Epub 2008 May 21.
3
In vitro characterization of the enzymes involved in TDP-D-forosamine biosynthesis in the spinosyn pathway of Saccharopolyspora spinosa.多刺糖多孢菌刺糖菌素生物合成途径中TDP-D-福乐胺生物合成相关酶的体外特性研究
J Am Chem Soc. 2008 Apr 9;130(14):4954-67. doi: 10.1021/ja0771383. Epub 2008 Mar 18.
4
A structural study of GDP-4-keto-6-deoxy-D-mannose-3-dehydratase: caught in the act of geminal diamine formation.GDP-4-酮-6-脱氧-D-甘露糖-3-脱水酶的结构研究:捕捉到偕二胺形成过程。
Biochemistry. 2007 Dec 11;46(49):14215-24. doi: 10.1021/bi701686s. Epub 2007 Nov 13.

本文引用的文献

1
Biosynthesis of colitose: expression, purification, and mechanistic characterization of GDP-4-keto-6-deoxy-D-mannose-3-dehydrase (ColD) and GDP-L-colitose synthase (ColC).可立糖的生物合成:GDP-4-酮-6-脱氧-D-甘露糖-3-脱氢酶(ColD)和GDP-L-可立糖合酶(ColC)的表达、纯化及机制表征
Biochemistry. 2004 Dec 28;43(51):16450-60. doi: 10.1021/bi0483763.
2
Identification of an unusual [2Fe-2S]-binding motif in the CDP-6-deoxy-D-glycero-l-threo-4-hexulose-3-dehydrase from Yersinia pseudotuberculosis: implication for C-3 deoxygenation in the biosynthesis of 3,6-dideoxyhexoses.在假结核耶尔森菌的CDP-6-脱氧-D-甘油-L-苏糖-4-己酮糖-3-脱水酶中鉴定出一种不寻常的[2Fe-2S]结合基序:对3,6-二脱氧己糖生物合成中C-3脱氧作用的影响。
Biochemistry. 2004 Nov 9;43(44):14265-74. doi: 10.1021/bi048841w.
3
Evolutionarily conserved regions and hydrophobic contacts at the superfamily level: The case of the fold-type I, pyridoxal-5'-phosphate-dependent enzymes.超家族水平上的进化保守区域和疏水接触:I型折叠、依赖磷酸吡哆醛的酶的情况。
Protein Sci. 2004 Nov;13(11):2992-3005. doi: 10.1110/ps.04938104.
4
Structures of gamma-aminobutyric acid (GABA) aminotransferase, a pyridoxal 5'-phosphate, and [2Fe-2S] cluster-containing enzyme, complexed with gamma-ethynyl-GABA and with the antiepilepsy drug vigabatrin.γ-氨基丁酸(GABA)转氨酶的结构,一种含磷酸吡哆醛5'-磷酸和[2Fe-2S]簇的酶,与γ-乙炔基-GABA和抗癫痫药物氨己烯酸复合。
J Biol Chem. 2004 Jan 2;279(1):363-73. doi: 10.1074/jbc.M305884200. Epub 2003 Oct 8.
5
Structural studies of Salmonella typhimurium ArnB (PmrH) aminotransferase: a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme.鼠伤寒沙门氏菌ArnB(PmrH)转氨酶的结构研究:一种4-氨基-4-脱氧-L-阿拉伯糖脂多糖修饰酶。
Structure. 2002 Nov;10(11):1569-80. doi: 10.1016/s0969-2126(02)00879-1.
6
Mechanisms of enzymatic CbondO bond cleavages in deoxyhexose biosynthesis.脱氧己糖生物合成中酶促C—O键断裂的机制。
Curr Opin Chem Biol. 2002 Oct;6(5):590-7. doi: 10.1016/s1367-5931(02)00367-8.
7
Homogeneous, nonradioactive, enzymatic assay for plasma pyridoxal 5-phosphate.血浆磷酸吡哆醛的均相、非放射性酶法测定
Clin Chem. 2002 Sep;48(9):1560-4.
8
Formation of unusual sugars: mechanistic studies and biosynthetic applications.异常糖的形成:机理研究与生物合成应用
Annu Rev Biochem. 2002;71:701-54. doi: 10.1146/annurev.biochem.71.110601.135339. Epub 2001 Nov 9.
9
Biosynthetic studies on the alpha-glucosidase inhibitor acarbose: the chemical synthesis of dTDP-4-amino-4,6-dideoxy-alpha-D-glucose.α-葡萄糖苷酶抑制剂阿卡波糖的生物合成研究:二磷酸胸苷-4-氨基-4,6-二脱氧-α-D-葡萄糖的化学合成
Carbohydr Res. 2002 Feb 18;337(4):297-304. doi: 10.1016/s0008-6215(01)00323-8.
10
Novel enzymatic mechanisms in carbohydrate metabolism.碳水化合物代谢中的新型酶促机制。
Chem Rev. 2000 Dec 13;100(12):4615-62. doi: 10.1021/cr9902998.