Canakci Sabriye, Belduz Ali Osman, Saha Badal C, Yasar Ahmet, Ayaz Faik Ahmet, Yayli Nurettin
Department of Biology, Faculty of Arts and Sciences, Karadeniz Technical University, 61080, Trabzon, Turkey.
Appl Microbiol Biotechnol. 2007 Jun;75(4):813-20. doi: 10.1007/s00253-007-0884-1. Epub 2007 Mar 15.
The gene encoding an alpha-L: -arabinofuranosidase from Geobacillus caldoxylolyticus TK4, AbfATK4, was isolated, cloned, and sequenced. The deduced protein had a molecular mass of about 58 kDa, and analysis of its amino acid sequence revealed significant homology and conservation of different catalytic residues with alpha-L: -arabinofuranosidases belonging to family 51 of the glycoside hydrolases. A histidine tag was introduced at the N-terminal end of AbfATK4, and the recombinant protein was expressed in Escherichia coli BL21, under control of isopropyl-beta-D-thiogalactopyranoside-inducible T7 promoter. The enzyme was purified by nickel affinity chromatography. The molecular mass of the native protein, as determined by gel filtration, was about 236 kDa, suggesting a homotetrameric structure. AbfATK4 was active at a broad pH range (pH 5.0-10.0) and at a broad temperature range (40-85 degrees C), and it had an optimum pH of 6.0 and an optimum temperature of 75-80 degrees C. The enzyme was more thermostable than previously described arabinofuranosidases and did not lose any activity after 48 h incubation at 70 degrees C. The protein exhibited a high level of activity with p-nitrophenyl-alpha-L: -arabinofuranoside, with apparent K (m) and V (max) values of 0.17 mM and 588.2 U/mg, respectively. AbfATK4 also exhibited a low level of activity with p-nitrophenyl-beta-D: -xylopyranoside, with apparent K (m) and V (max) values of 1.57 mM and 151.5 U/mg, respectively. AbfATK4 released L: -arabinose only from arabinan and arabinooligosaccharides. No endoarabinanase activity was detected. These findings suggest that AbfATK4 is an exo-acting enzyme.
从嗜热解木聚糖地芽孢杆菌TK4中分离、克隆并测序了编码α-L-阿拉伯呋喃糖苷酶的基因AbfATK4。推导的蛋白质分子量约为58 kDa,对其氨基酸序列的分析显示,与糖苷水解酶家族51的α-L-阿拉伯呋喃糖苷酶具有显著的同源性和不同催化残基的保守性。在AbfATK4的N末端引入了组氨酸标签,重组蛋白在异丙基-β-D-硫代半乳糖苷诱导的T7启动子控制下在大肠杆菌BL21中表达。通过镍亲和层析纯化该酶。通过凝胶过滤测定的天然蛋白质分子量约为236 kDa,表明其为同四聚体结构。AbfATK4在较宽的pH范围(pH 5.0-10.0)和较宽的温度范围(40-85℃)下具有活性,其最适pH为6.0,最适温度为75-80℃。该酶比先前描述的阿拉伯呋喃糖苷酶更耐热,在70℃孵育48小时后没有失去任何活性。该蛋白对对硝基苯基-α-L-阿拉伯呋喃糖苷表现出高水平的活性,表观K(m)和V(max)值分别为0.17 mM和588.2 U/mg。AbfATK4对对硝基苯基-β-D-木糖苷也表现出低水平的活性,表观K(m)和V(max)值分别为1.57 mM和151.5 U/mg。AbfATK4仅从阿拉伯聚糖和阿拉伯低聚糖中释放L-阿拉伯糖。未检测到内切阿拉伯聚糖酶活性。这些发现表明AbfATK4是一种外切作用酶。