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分子模拟可实现天然无序蛋白质的竞争性募集。

Molecular mimicry enables competitive recruitment by a natively disordered protein.

作者信息

Bonsor Daniel A, Grishkovskaya Irina, Dodson Eleanor J, Kleanthous Colin

机构信息

Department of Biology, University of York, Heslington, York, YO10 5YW, United Kingdom.

出版信息

J Am Chem Soc. 2007 Apr 18;129(15):4800-7. doi: 10.1021/ja070153n. Epub 2007 Mar 22.

Abstract

We report the crystal structure of the Escherichia coli TolB-Pal complex, a protein-protein complex involved in maintaining the integrity of the outer membrane (OM) in all Gram-negative bacteria that is parasitized by colicins (protein antibiotics) to expedite their entry into cells. Nuclease colicins competitively recruit TolB using their natively disordered regions (NDRs) to disrupt its complex with Pal, which is thought to trigger translocation of the toxin across a locally destabilized OM. The structure shows induced-fit binding of peptidoglycan-associated lipoprotein (Pal) to the beta-propeller domain of TolB causing the N-terminus of one of its alpha-helices to unwind and several residues to undergo substantial changes in conformation. The resulting interactions with TolB are known to be essential for the stability of the complex and the bacterial OM. Structural comparisons with a TolB-colicin NDR complex reveal that colicins bind at the Pal site, mimicking rearranged Pal residues while simultaneously appearing to block induced-fit changes in TolB. The study therefore explains how colicins recruit TolB in the bacterial periplasm and highlights a novel binding mechanism for a natively disordered protein.

摘要

我们报道了大肠杆菌TolB-Pal复合物的晶体结构,该蛋白-蛋白复合物参与维持所有革兰氏阴性菌外膜(OM)的完整性,而大肠杆菌素(蛋白质抗生素)可寄生在这些细菌中以加速其进入细胞。核酸酶大肠杆菌素利用其天然无序区域(NDRs)竞争性招募TolB,以破坏其与Pal的复合物,据认为这会触发毒素穿过局部不稳定的外膜的转运。该结构显示肽聚糖相关脂蛋白(Pal)与TolB的β-螺旋桨结构域的诱导契合结合,导致其一个α-螺旋的N端展开,几个残基的构象发生实质性变化。已知与TolB的这种相互作用对于复合物和细菌外膜的稳定性至关重要。与TolB-大肠杆菌素NDR复合物的结构比较表明,大肠杆菌素在Pal位点结合,模仿重排的Pal残基,同时似乎阻止TolB的诱导契合变化。因此,该研究解释了大肠杆菌素如何在细菌周质中招募TolB,并突出了一种天然无序蛋白的新型结合机制。

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