Laskowski Roman A
European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK.
Bioinformatics. 2007 Jul 15;23(14):1824-7. doi: 10.1093/bioinformatics/btm085. Epub 2007 Mar 24.
The Protein Data Bank (PDB) contains over 43,800 experimentally determined 3D models of macromolecular structures and their complexes. Each 3D model reveals something interesting and important about the given molecule's function and biological significance. Usually the best source of this information is the original article describing it, and it is often possible to discern the key aspects of the structure from just one or two of the figures in that article.
Here we describe how, with the permission of the journals and their publishers, we have endeavoured to make these key figures publicly available to enhance the functional information relating to each PDB entry in our PDBsum database.
蛋白质数据库(PDB)包含超过43,800个通过实验确定的大分子结构及其复合物的三维模型。每个三维模型都揭示了给定分子的功能和生物学意义中一些有趣且重要的信息。通常,这些信息的最佳来源是描述该模型的原始文章,而且往往仅从该文章中的一两个图就能识别出结构的关键方面。
在此我们描述了在获得期刊及其出版商许可的情况下,我们如何努力使这些关键图公开可用,以增强我们的PDBsum数据库中与每个PDB条目相关的功能信息。