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三线态双分子氧与对苯二酚、半醌及其质子化形式反应能量学的理论研究:与呼吸链中超氧化物生成机制的关系

Theoretical study of the energetics of the reactions of triplet dioxygen with hydroquinone, semiquinone, and their protonated forms: relation to the mechanism of superoxide generation in the respiratory chain.

作者信息

Bobrowski Maciej, Liwo Adam, Hirao Kimihiko

机构信息

Faculty of Technical Physics and Applied Mathematics, Gdańsk University of Technology, Narutowicza 11/12, 80-952 Gdańsk, Poland.

出版信息

J Phys Chem B. 2007 Apr 5;111(13):3543-9. doi: 10.1021/jp065603x. Epub 2007 Mar 14.

DOI:10.1021/jp065603x
PMID:17388501
Abstract

One-electron reduction of the dioxygen molecule by the reduced form of mitochondrial ubiquinones (Q) of the NADH dehydrogenase (complex I) and mitochondrial cytochrome bc1 (complex III) is believed to be the main source of the superoxide anion radical O2*- and the hydroperoxide radical OOH*. In this work, we modeled the energetics of four possible reactions of the triplet ((3)Sigma(g)) dioxygen-molecule reduction by fully reduced and protonated ubiquinone (QH2; reaction 1), its deprotonated form (QH-; reaction 2), the semiquinone radical (QH*; reaction 3), and the semiquinone anion radical (Q*-; reaction 4), by means of ab initio calculations with the 6-31G(d) and 6-31+G(d) basis set in the restricted open-shell Hartree-Fock (ROHF), unrestricted Hartree-Fock (UHF), and complete active space self-consistent field (CASSCF) with dynamic correlation [at the second-order Møller-Plesset (MP2) or multiple reference Møller-Plesset (MRMP), respectively] schemes and the basis set superposition error (BSSE) correction included, as well as semiempirical AM1 and PM3 calculations in the UHF and ROHF schemes. 2-Butene-1,4-dione and p-benzoquinone were selected as model compounds. For the reduced forms of both compounds, reaction 1 turned out to be energetically unfavorable at all levels of theory, this agreeing with the experimentally observed diminished reductive properties of hydroquinone derivatives at low pH. For 2-butene-1,4-dione treated at the most advanced MRMP/CASSCF/6-31+G(d) level, the energies of reactions 1-4 are 4.7, -34.3, -15.0, and -4.1 kcal/mol, respectively. This finding suggests that reactions 2 and 3 are the most likely mechanisms of electron transfer to molecular oxygen in aprotic environments and that proton transfer is involved in this process. Nearly the same energies of reactions 2 and 3 were calculated at the MRMP/CASSCF/6-31+G(d) level for reduced forms of p-benzoquinone. Inclusion of diffuse functions in the basis set and dynamic correlation at the CASSCF level appears essential. Because deprotonated ubiquinol is unlikely to exist in physiological environments, reaction 3 appears to be the most likely mechanism of one-electron reduction of oxygen; however, if oxygen can penetrate cytochrome bc1 as far as the Q(o) center where ubiquinol can be deprotonated, reaction 2 can also come into play. The energies of reactions 2 and 3 calculated at the MRMP/CASSCF/6-31+G(d) level are most closely reproduced in the ab initio and semiempirical UHF PM3 calculations. Additional semiempirical calculations on more realistic models of ubiquinone, 2,3-dimethoxy-6-methyl-p-benzoquinone and 2,3-dimethoxy-5-isoprenyl-6-methyl-p-benzoquinone, gave qualitatively the same relations between the energies of reactions 2 and 3 as those carried out for p-benzoquinone species, thereby suggesting that this method could be used in studying electron-transfer reactions from reduced quinone derivatives to molecular oxygen in more complex systems, such as a model of the Q(o) site of cytochrome bc1, where applying ab initio methods is unfeasible.

摘要

人们认为,烟酰胺腺嘌呤二核苷酸(NADH)脱氢酶(复合体I)和线粒体细胞色素bc1(复合体III)的线粒体泛醌(Q)还原形式对双原子氧分子的单电子还原作用是超氧阴离子自由基O2*-和氢过氧自由基OOH的主要来源。在本研究中,我们通过从头算方法对完全还原并质子化的泛醌(QH2;反应1)、其去质子化形式(QH-;反应2)、半醌自由基(QH;反应3)和半醌阴离子自由基(Q*-;反应4)与三线态((3)Σg)双原子氧分子的四种可能反应的能量进行了模拟计算。计算采用了6-31G(d)和6-31+G(d)基组,分别在受限开壳层哈特里-福克(ROHF)、非受限哈特里-福克(UHF)以及包含动态相关的完全活性空间自洽场(CASSCF)方法(分别为二阶莫勒-普列斯特定理(MP2)或多参考莫勒-普列斯特定理(MRMP))中进行,并包含基组叠加误差(BSSE)校正,同时还进行了UHF和ROHF方法下的半经验AM1和PM3计算。选取2-丁烯-1,4-二酮和对苯醌作为模型化合物。对于这两种化合物的还原形式,在所有理论水平下反应1在能量上都是不利的,这与实验观察到的对苯二酚衍生物在低pH值下还原性质减弱的现象一致。对于在最先进的MRMP/CASSCF/6-31+G(d)水平下处理的2-丁烯-1,4-二酮,反应1-4的能量分别为4.7、-34.3、-15.0和-4.1千卡/摩尔。这一发现表明,反应2和反应3是在非质子环境中电子转移至分子氧的最可能机制,且该过程涉及质子转移。对于对苯醌的还原形式,在MRMP/CASSCF/6-31+G(d)水平下计算得到的反应2和反应3的能量几乎相同。在基组中包含弥散函数以及在CASSCF水平下考虑动态相关似乎至关重要。由于去质子化的泛醇在生理环境中不太可能存在,反应3似乎是氧单电子还原的最可能机制;然而,如果氧能够穿透细胞色素bc1到达泛醇可以去质子化的Q(o)中心,反应2也可能起作用。在MRMP/CASSCF/6-31+G(d)水平下计算得到的反应2和反应3的能量,在从头算和半经验UHF PM3计算中得到了最接近的重现。对更符合实际的泛醌模型2,3-二甲氧基-6-甲基-对苯醌和2,3-二甲氧基-5-异戊烯基-6-甲基-对苯醌进行的额外半经验计算,在反应2和反应3的能量关系上与对对苯醌物种进行的计算定性相同,这表明该方法可用于研究在更复杂系统中从还原醌衍生物到分子氧的电子转移反应,例如细胞色素bc1的Q(o)位点模型,而在该模型中应用从头算方法是不可行的。

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