Schümmer Tobias, Gromadski Kirill B, Rodnina Marina V
Institute of Physical Biochemistry, University of Witten/Herdecke, D-58448 Witten, Germany.
Biochemistry. 2007 May 1;46(17):4977-84. doi: 10.1021/bi602486c. Epub 2007 Mar 31.
Elongation factor Tu (EF-Tu) belongs to the family of GTP-binding proteins and requires elongation factor Ts (EF-Ts) for nucleotide exchange. Crystal structures suggested that one of the salient features in the EF-Tu x EF-Ts complex is a conformation change in the switch II region of EF-Tu that is initiated by intrusion of Phe81 of EF-Ts between His84 and His118 of EF-Tu and may result in a destabilization of Mg2+ coordination and guanine nucleotide release. In the present paper, the contribution of His84 to nucleotide release was studied by pre-steady-state kinetic analysis of nucleotide exchange in mutant EF-Tu in which His84 was replaced by Ala. Both intrinsic and EF-Ts-catalyzed nucleotide release was affected by the mutation, resulting in a 10-fold faster spontaneous GDP release and a 4-fold faster EF-Ts-catalyzed release of GTP and GDP. Removal of Mg2+ from the EF-Tu x EF-Ts complex increased the rate constant of GDP release 2-fold, suggesting a small contribution to nucleotide exchange. Together with published data on the effects of mutations interfering with other putative interactions between EF-Tu and EF-Ts, the results suggest that each of the contacts in the EF-Tu x EF-Ts complex alone contributes moderately to nucleotide destabilization, but together they act synergistically to bring about the overall 60,000-fold acceleration of nucleotide exchange in EF-Tu by EF-Ts.
延伸因子Tu(EF-Tu)属于GTP结合蛋白家族,核苷酸交换需要延伸因子Ts(EF-Ts)。晶体结构表明,EF-Tu与EF-Ts复合物的一个显著特征是EF-Tu的开关II区域发生构象变化,这是由EF-Ts的苯丙氨酸81侵入EF-Tu的组氨酸84和组氨酸118之间引发的,可能导致Mg2+配位不稳定和鸟嘌呤核苷酸释放。在本文中,通过对组氨酸84被丙氨酸取代的突变型EF-Tu中的核苷酸交换进行稳态前动力学分析,研究了组氨酸84对核苷酸释放的贡献。突变影响了内在的和EF-Ts催化的核苷酸释放,导致自发GDP释放速度加快10倍,EF-Ts催化的GTP和GDP释放速度加快4倍。从EF-Tu与EF-Ts复合物中去除Mg2+使GDP释放速率常数增加了2倍,表明对核苷酸交换的贡献较小。结合已发表的关于干扰EF-Tu与EF-Ts之间其他假定相互作用的突变影响的数据,结果表明,EF-Tu与EF-Ts复合物中的每个接触单独对核苷酸不稳定有适度贡献,但它们共同协同作用,使EF-Ts介导的EF-Tu中的核苷酸交换总体加速60000倍。