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人类细胞中的靶向睡美人转座

Targeted Sleeping Beauty transposition in human cells.

作者信息

Ivics Zoltán, Katzer Andrea, Stüwe Eva E, Fiedler Dora, Knespel Siegne, Izsvák Zsuzsanna

机构信息

Max Delbrück Center for Molecular Medicine, Berlin, Germany.

出版信息

Mol Ther. 2007 Jun;15(6):1137-44. doi: 10.1038/sj.mt.6300169. Epub 2007 Apr 10.

DOI:10.1038/sj.mt.6300169
PMID:17426709
Abstract

Transposons are natural gene delivery vehicles. The Sleeping Beauty (SB) transposon shows efficient transposition and long-term transgene expression in the cells of vertebrates including humans. SB transposition into chromosomal DNA occurs in a fairly random manner. This is clearly not desirable in human gene therapeutic applications because there are potential genotoxic effects associated with transposon integration. In this study we set out to manipulate the selection of SB's target sites for targeted transposition into predetermined chromosomal regions. We evaluated experimental strategies based on engineered proteins composed of DNA-binding domains fused to (i) the transposase; (ii) another protein that binds to a specific DNA sequence within the transposable element; and (iii) another protein that interacts with the transposase. We demonstrated targeted transposition into endogenous matrix attachment regions (MARs) and a chromosomally integrated tetracycline response element (TRE) in cultured human cells, using targeting proteins that bind to the transposon DNA. An approach based on interactions between the transposase and a targeting protein containing the N-terminal protein interaction domain of SB was found to enable an approximately 10(7)-fold enrichment of transgene insertion at a desired locus. Our experiments provide proof-of-principle for targeted chromosomal transposition of an otherwise randomly integrating transposon. Targeted transposition can be a powerful technology for safe transgene integration in human therapeutic applications.

摘要

转座子是天然的基因传递载体。睡美人(SB)转座子在包括人类在内的脊椎动物细胞中表现出高效的转座和长期的转基因表达。SB转座到染色体DNA中以相当随机的方式发生。这在人类基因治疗应用中显然是不可取的,因为转座子整合存在潜在的基因毒性效应。在本研究中,我们着手操纵SB的靶位点选择,以实现靶向转座到预定的染色体区域。我们评估了基于由与(i)转座酶融合的DNA结合结构域组成的工程蛋白;(ii)与转座元件内特定DNA序列结合的另一种蛋白;以及(iii)与转座酶相互作用的另一种蛋白的实验策略。我们使用与转座子DNA结合的靶向蛋白,证明了在培养的人类细胞中靶向转座到内源性基质附着区域(MARs)和染色体整合的四环素反应元件(TRE)中。发现一种基于转座酶与含有SB N端蛋白相互作用结构域的靶向蛋白之间相互作用的方法,能够使转基因在所需位点的插入富集约10^7倍。我们的实验为原本随机整合的转座子的靶向染色体转座提供了原理证明。靶向转座可能是一种在人类治疗应用中实现安全转基因整合的强大技术。

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1
Targeted Sleeping Beauty transposition in human cells.人类细胞中的靶向睡美人转座
Mol Ther. 2007 Jun;15(6):1137-44. doi: 10.1038/sj.mt.6300169. Epub 2007 Apr 10.
2
Transposon Insertions into Nucleolar DNA by an Engineered Transposase Localized in the Nucleolus.转座酶定位于核仁中转座子插入核仁 DNA。
Int J Mol Sci. 2023 Oct 7;24(19):14978. doi: 10.3390/ijms241914978.
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Sleeping Beauty, a wide host-range transposon vector for genetic transformation in vertebrates.“睡美人”,一种用于脊椎动物基因转化的广泛宿主范围转座子载体。
J Mol Biol. 2000 Sep 8;302(1):93-102. doi: 10.1006/jmbi.2000.4047.
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Retargeting sleeping beauty transposon insertions by engineered zinc finger DNA-binding domains.通过工程化锌指 DNA 结合域重新定位睡眠美人转座子插入。
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Counterselection and co-delivery of transposon and transposase functions for Sleeping Beauty-mediated transposition in cultured mammalian cells.在培养的哺乳动物细胞中,用于睡美人介导转座的转座子和转座酶功能的反选择和共递送。
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Mutational analysis of the N-terminal DNA-binding domain of sleeping beauty transposase: critical residues for DNA binding and hyperactivity in mammalian cells.睡美人转座酶N端DNA结合结构域的突变分析:哺乳动物细胞中DNA结合及高活性的关键残基
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Sleeping beauty transposition: biology and applications for molecular therapy.睡美人转座:生物学及分子治疗应用
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The DNA-bending protein HMGB1 is a cellular cofactor of Sleeping Beauty transposition.DNA弯曲蛋白HMGB1是睡美人转座的细胞辅助因子。
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Sleeping beauty transposase has an affinity for heterochromatin conformation.睡美人转座酶对异染色质构象具有亲和力。
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10
Site-directed transposon integration in human cells.人细胞中的位点特异性转座子整合
Nucleic Acids Res. 2007;35(7):e50. doi: 10.1093/nar/gkm089. Epub 2007 Mar 7.

引用本文的文献

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DNA binding and transposition activity of the Sleeping Beauty transposase: role of structural stability of the primary DNA-binding domain.睡美人转座酶的DNA结合与转座活性:主要DNA结合结构域的结构稳定性作用
Nucleic Acids Res. 2025 Jan 11;53(2). doi: 10.1093/nar/gkae1188.
2
Transposon Insertions into Nucleolar DNA by an Engineered Transposase Localized in the Nucleolus.转座酶定位于核仁中转座子插入核仁 DNA。
Int J Mol Sci. 2023 Oct 7;24(19):14978. doi: 10.3390/ijms241914978.
3
Instructional materials that control cellular activity through synthetic Notch receptors.
通过合成 Notch 受体控制细胞活动的教学材料。
Biomaterials. 2023 Jun;297:122099. doi: 10.1016/j.biomaterials.2023.122099. Epub 2023 Mar 29.
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Construction and Quantitative Evaluation of a Tissue-Specific Sleeping Beauty by EDL2-Specific Transposase Expression in Esophageal Squamous Carcinoma Cell Line KYSE-30.通过在食管鳞状癌细胞系KYSE-30中表达EDL2特异性转座酶构建组织特异性睡眠美及其定量评估
Mol Biotechnol. 2023 Mar;65(3):350-360. doi: 10.1007/s12033-022-00490-4. Epub 2022 Apr 26.
5
Transposase-CRISPR mediated targeted integration (TransCRISTI) in the human genome.转座酶-CRISPR 介导的靶向整合(TransCRISTI)在人类基因组中的应用。
Sci Rep. 2022 Mar 1;12(1):3390. doi: 10.1038/s41598-022-07158-8.
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CARAMBA: a first-in-human clinical trial with SLAMF7 CAR-T cells prepared by virus-free Sleeping Beauty gene transfer to treat multiple myeloma.卡拉巴:首例采用无病毒 Sleeping Beauty 基因转导制备的 SLAMF7 CAR-T 细胞治疗多发性骨髓瘤的人体临床试验。
Gene Ther. 2021 Sep;28(9):560-571. doi: 10.1038/s41434-021-00254-w. Epub 2021 Apr 13.
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Potential of transposon-mediated cellular reprogramming towards cell-based therapies.转座子介导的细胞重编程在基于细胞疗法中的潜力。
World J Stem Cells. 2020 Jul 26;12(7):527-544. doi: 10.4252/wjsc.v12.i7.527.
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RNA-guided retargeting of S transposition in human cells.RNA 引导的人类细胞中 S 转座子的重定向。
Elife. 2020 Mar 6;9:e53868. doi: 10.7554/eLife.53868.
9
Targeted DNA transposition in vitro using a dCas9-transposase fusion protein.利用 dCas9-转座酶融合蛋白在体外进行靶向 DNA 转位。
Nucleic Acids Res. 2019 Sep 5;47(15):8126-8135. doi: 10.1093/nar/gkz552.
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Evaluating different DNA binding domains to modulate L1 ORF2p-driven site-specific retrotransposition events in human cells.评估不同的DNA结合结构域以调节人类细胞中L1 ORF2p驱动的位点特异性逆转座事件。
Gene. 2018 Feb 5;642:188-198. doi: 10.1016/j.gene.2017.11.033. Epub 2017 Nov 14.