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蛋白质翻译后修饰的表面可及性。

Surface accessibility of protein post-translational modifications.

作者信息

Pang Chi Nam Ignatius, Hayen Andrew, Wilkins Marc Ronald

机构信息

Systems Biology Group, School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW, Australia.

出版信息

J Proteome Res. 2007 May;6(5):1833-45. doi: 10.1021/pr060674u. Epub 2007 Apr 12.

Abstract

Protein post-translational modifications are crucial to the function of many proteins. In this study, we have investigated the structural environment of 8378 incidences of 44 types of post-translational modifications with 19 different approaches. We show that modified amino acids likely to be involved in protein-protein interactions, such as ester-linked phosphorylation, methylarginine, acetyllysine, sulfotyrosine, hydroxyproline, and hydroxylysine, are clearly surface associated. Other modifications, including O-GlcNAc, phosphohistidine, 4-aspartylphosphate, methyllysine, and ADP-ribosylarginine, are either not surface associated or are in a protein's core. Artifactual modifications were found to be randomly distributed throughout the protein. We discuss how the surface accessibility of post-translational modifications can be important for protein-protein interactivity.

摘要

蛋白质翻译后修饰对于许多蛋白质的功能至关重要。在本研究中,我们采用19种不同方法研究了44种翻译后修饰的8378个实例的结构环境。我们发现,可能参与蛋白质-蛋白质相互作用的修饰氨基酸,如酯联磷酸化、甲基精氨酸、乙酰赖氨酸、磺基酪氨酸、羟脯氨酸和羟赖氨酸,明显与表面相关。其他修饰,包括O-连接的N-乙酰葡糖胺、磷酸组氨酸、4-天冬氨酰磷酸、甲基赖氨酸和ADP-核糖基精氨酸,要么不与表面相关,要么位于蛋白质的核心部位。发现人为修饰在整个蛋白质中随机分布。我们讨论了翻译后修饰的表面可及性如何对蛋白质-蛋白质相互作用很重要。

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