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利用 gyrB-PCR-Sau3AI 指纹图谱对苏云金芽孢杆菌菌株进行区分。

Differentiation between Bacillus thuringiensis strains by gyrB PCR-Sau3AI fingerprinting.

机构信息

Faculty of Sciences, University Saint-Joseph, Beirut, Lebanon.

出版信息

Mol Biotechnol. 2007 Feb;35(2):171-7. doi: 10.1007/BF02686112.

DOI:10.1007/BF02686112
PMID:17435283
Abstract

gyrB DNA fragments of seven Bacillus thuringiensis local collection family representatives were amplified by PCR and sequenced. Several differences in their corresponding sequences were evidenced. Both in silico and in vitro restriction maps of gyrB sequences and fragments respectively confirmed that EcoRI and Sau3AI could be used to differentiate between B. thuringiensis strains. However, the phylogeny analysis showed that only the gyrB PCR-Sau3AI allows a strains classification that correlates very well with that obtained on the basis of the sequences analysis. Thus, these finds show that gyrB PCR- Sau3AI digestion could be considered as an efficient, rapid, and easy method to make a distinction, not only between strains belonging to the Bacillus cereus group, but also between those belonging to B. thuringiensis.

摘要

通过 PCR 扩增和测序,对 7 种苏云金芽孢杆菌地方采集株代表的 gyrB DNA 片段进行了研究。结果表明,它们的相应序列存在一些差异。gyrB 序列及其片段的计算机模拟和体外酶切图谱均证实,EcoRI 和 Sau3AI 可用于区分苏云金芽孢杆菌菌株。然而,系统发育分析表明,只有 gyrB PCR-Sau3AI 允许对菌株进行分类,该分类与基于序列分析获得的分类非常吻合。因此,这些发现表明,gyrB PCR-Sau3AI 消化可被视为一种有效、快速且简便的方法,不仅可区分属于蜡状芽孢杆菌群的菌株,还可区分属于苏云金芽孢杆菌的菌株。

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本文引用的文献

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Genotypic Diversity among Bacillus cereus and Bacillus thuringiensis Strains.蜡样芽胞杆菌和苏云金芽胞杆菌菌株的基因型多样性。
Appl Environ Microbiol. 1994 Jun;60(6):1719-25. doi: 10.1128/aem.60.6.1719-1725.1994.
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Selective Process for Efficient Isolation of Soil Bacillus spp.选择性培养方法高效分离土壤芽孢杆菌属
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Use of 16S rRNA, 23S rRNA, and gyrB gene sequence analysis to determine phylogenetic relationships of Bacillus cereus group microorganisms.
使用16S rRNA、23S rRNA和gyrB基因序列分析来确定蜡样芽孢杆菌群微生物的系统发育关系。
J Clin Microbiol. 2004 Aug;42(8):3711-30. doi: 10.1128/JCM.42.8.3711-3730.2004.
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Bacillus anthracis diverges from related clades of the Bacillus cereus group in 16S-23S ribosomal DNA intergenic transcribed spacers containing tRNA genes.炭疽芽孢杆菌在含有tRNA基因的16S - 23S核糖体DNA基因间隔转录间隔区与蜡样芽孢杆菌群的相关进化枝不同。
Appl Environ Microbiol. 2003 Jan;69(1):33-40. doi: 10.1128/AEM.69.1.33-40.2003.
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Bacillus cereus, Bacillus thuringiensis and Bacillus mycoides differentiation using a PCR-RE technique.使用PCR-RE技术区分蜡样芽孢杆菌、苏云金芽孢杆菌和蕈状芽孢杆菌。
Int J Food Microbiol. 2003 Mar 25;81(3):249-54. doi: 10.1016/s0168-1605(02)00222-2.
6
Discrimination of Bacillus cereus and Bacillus thuringiensis with 16S rRNA and gyrB gene based PCR primers and sequencing of their annealing sites.基于16S rRNA和gyrB基因的PCR引物对蜡样芽孢杆菌和苏云金芽孢杆菌进行鉴别及其退火位点测序
J Appl Microbiol. 2002;92(5):912-9. doi: 10.1046/j.1365-2672.2002.01606.x.
7
Construction and characterization of a recombinant Bacillus thuringiensis subsp. israelensis strain that produces Cry11B.产生Cry11B的苏云金芽孢杆菌以色列亚种重组菌株的构建与特性分析
J Invertebr Pathol. 2001 Jul;78(1):37-44. doi: 10.1006/jipa.2001.5038.
8
Cloning and nucleotide sequence analysis of gyrB of Bacillus cereus, B. thuringiensis, B. mycoides, and B. anthracis and their application to the detection of B. cereus in rice.蜡样芽孢杆菌、苏云金芽孢杆菌、蕈状芽孢杆菌和炭疽芽孢杆菌gyrB基因的克隆、核苷酸序列分析及其在大米中蜡样芽孢杆菌检测中的应用
Appl Environ Microbiol. 1999 Apr;65(4):1483-90. doi: 10.1128/AEM.65.4.1483-1490.1999.
9
Arbitrary primer polymerase chain reaction, a powerful method to identify Bacillus thuringiensis serovars and strains.任意引物聚合酶链反应,一种鉴定苏云金芽孢杆菌血清型和菌株的强大方法。
Appl Environ Microbiol. 1993 Jan;59(1):114-9. doi: 10.1128/aem.59.1.114-119.1993.
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Multiplex polymerase chain reaction for detection and differentiation of the microbial insecticide Bacillus thuringiensis.用于检测和区分微生物杀虫剂苏云金芽孢杆菌的多重聚合酶链反应。
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