Jolly Emmitt R, Chin Chen-Shan, Miller Steve, Bahgat Mahmoud M, Lim K C, DeRisi Joseph, McKerrow James H
California Institute for Quantitative Biomedical Research (QB3) of the University of California, San Francisco, San Francisco, CA 94158 USA.
Genome Biol. 2007;8(4):R65. doi: 10.1186/gb-2007-8-4-r65.
Schistosome bloodflukes are complex trematodes responsible for 200 million cases of schistosomiasis worldwide. Their life cycle is characterized by a series of remarkable morphological and biochemical transitions between an invertebrate host, an aquatic environment, and a mammalian host. We report a global transcriptional analysis of how this parasite alters gene regulation to adapt to three distinct environments.
Utilizing a genomic microarray made of 12,000 45-50-mer oligonucleotides based on expressed sequence tags, three different developmental stages of the schistosome parasite were analyzed by pair-wise comparisons of transcript hybridization signals. This analysis resulted in the identification of 1,154 developmentally enriched transcripts.
This study expands the repertoire of schistosome genes analyzed for stage-specific expression to over 70% of the predicted genome. Among the new associations identified are the roles of robust protein synthesis and programmed cell death in development of cercariae in the sporocyst stages, the relative paucity of cercarial gene expression outside of energy production, and the remarkable diversity of adult gene expression programs that reflect adaptation to the host bloodstream and an average lifespan that may approach 10 years.
血吸虫是复杂的吸虫,在全球导致2亿例血吸虫病。它们的生命周期以在无脊椎动物宿主、水生环境和哺乳动物宿主之间一系列显著的形态和生化转变为特征。我们报告了一项关于这种寄生虫如何改变基因调控以适应三种不同环境的全球转录分析。
利用基于表达序列标签的由12,000个45 - 50聚体寡核苷酸制成的基因组微阵列,通过转录本杂交信号的成对比较分析了血吸虫寄生虫的三个不同发育阶段。该分析导致鉴定出1154个发育富集转录本。
本研究将分析阶段特异性表达的血吸虫基因库扩展到预测基因组的70%以上。在新发现的关联中包括强大的蛋白质合成和程序性细胞死亡在尾蚴在胞蚴阶段发育中的作用、尾蚴基因表达在能量产生之外相对较少、以及成虫基因表达程序的显著多样性,这反映了对宿主血流的适应以及可能接近10年的平均寿命。