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一种表皮稳态控制的建模方法。

A modelling approach towards epidermal homoeostasis control.

作者信息

Schaller Gernot, Meyer-Hermann Michael

机构信息

Frankfurt Institute for Advanced Studies (FIAS), Johann Wolfgang Goethe-Universität, Max von Laue-Strasse 1, D-60438 Frankfurt am Main, Germany.

出版信息

J Theor Biol. 2007 Aug 7;247(3):554-73. doi: 10.1016/j.jtbi.2007.03.023. Epub 2007 Mar 23.

Abstract

In order to grasp the features arising from cellular discreteness and individuality, in large parts of cell tissue modelling agent-based models are favoured. The subclass of off-lattice models allows for a physical motivation of the intercellular interaction rules. We apply an improved version of a previously introduced off-lattice agent-based model to the steady-state flow equilibrium of skin. The dynamics of cells is determined by conservative and drag forces, supplemented with delta-correlated random forces. Cellular adjacency is detected by a weighted Delaunay triangulation. The cell cycle time of keratinocytes is controlled by a diffusible substance provided by the dermis. Its concentration is calculated from a diffusion equation with time-dependent boundary conditions and varying diffusion coefficients. The dynamics of a nutrient is also taken into account by a reaction-diffusion equation. It turns out that the analysed control mechanism suffices to explain several characteristics of epidermal homoeostasis formation. In addition, we examine the question of how in silico melanoma with decreased basal adhesion manage to persist within the steady-state flow equilibrium of the skin. Interestingly, even for melanocyte cell cycle times being substantially shorter than for keratinocytes, tiny stochastic effects can lead to completely different outcomes. The results demonstrate that the understanding of initial states of tumour growth can profit significantly from the application of off-lattice agent-based models in computer simulations.

摘要

为了掌握细胞离散性和个体性所产生的特征,在细胞组织建模的大部分内容中,基于主体的模型更受青睐。非格子模型的子类允许对细胞间相互作用规则进行物理推导。我们将先前引入的非格子基于主体的模型的改进版本应用于皮肤的稳态流动平衡。细胞的动力学由保守力和阻力决定,并辅以δ相关随机力。通过加权德劳内三角剖分检测细胞邻接性。角质形成细胞的细胞周期时间由真皮提供的一种可扩散物质控制。其浓度根据具有时间依赖性边界条件和变化扩散系数的扩散方程计算得出。营养物质的动力学也通过反应扩散方程来考虑。结果表明,所分析的控制机制足以解释表皮稳态形成的几个特征。此外,我们研究了基底粘附力降低的计算机模拟黑色素瘤如何在皮肤的稳态流动平衡中持续存在的问题。有趣的是,即使黑色素细胞的细胞周期时间比角质形成细胞短得多,微小的随机效应也可能导致完全不同的结果。结果表明,在计算机模拟中应用非格子基于主体的模型可以显著有助于理解肿瘤生长的初始状态。

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