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PLMaddon:用于Matlab SBToolbox的幂律模块。

PLMaddon: a power-law module for the Matlab SBToolbox.

作者信息

Vera Julio, Sun Cheng, Oertel Yvonne, Wolkenhauer Olaf

机构信息

Systems Biology and Bioinformatics Group, Department of Computer Science. University of Rostock, 18051 Rostock, Germany.

出版信息

Bioinformatics. 2007 Oct 1;23(19):2638-40. doi: 10.1093/bioinformatics/btm245. Epub 2007 May 11.

Abstract

PLMaddon is a General Public License (GPL) software module designed to expand the current version of the SBToolbox (a Matlab toolbox for systems biology; www.sbtoolbox.org) with a set of functions for the analysis of power-law models, a specific class of kinetic models, set in ordinary differential equations (ODE) and in which the kinetic orders can have positive/negative non-integer values. The module includes functions to generate power-law Taylor expansions of other ODE models (e.g. Michaelis-Menten type models), as well as algorithms to estimate steady-states. The robustness and sensitivity of the models can also be analysed and visualized by computing the power-law's logarithmic gains and sensitivities.

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