从OBO到OWL：一个用于读取/保存OBO本体的Protege OWL标签。

OBO to OWL: a protege OWL tab to read/save OBO ontologies.

作者信息

Moreira Dilvan A, Musen Mark A

机构信息

Stanford Medical Informatics, Stanford University School of Medicine, Stanford, CA 94002, USA.

出版信息

Bioinformatics. 2007 Jul 15;23(14):1868-70. doi: 10.1093/bioinformatics/btm258. Epub 2007 May 12.

DOI:10.1093/bioinformatics/btm258

PMID:17496317

Abstract

UNLABELLED

The Open Biomedical Ontologies (OBO) format from the GO consortium is a very successful format for biomedical ontologies, including the Gene Ontology. But it lacks formal computational definitions for its constructs and tools, like DL reasoners, to facilitate ontology development/maintenance. We describe the OBO Converter, a Java tool to convert files from OBO format to Web Ontology Language (OWL) (and vice versa) that can also be used as a Protégé Tab plug-in. It uses the OBO to OWL mapping provided by the National Center for Biomedical Ontologies (NCBO) (a joint effort of OBO developers and OWL experts) and offers options to ease the task of saving/reading files in both formats.

AVAILABILITY

bioontology.org/tools/oboinowl/obo_converter.html.

SUPPLEMENTARY INFORMATION

Supplementary data are available at Bioinformatics online.

摘要

未标注

基因本体论协会的开放生物医学本体（OBO）格式是生物医学本体（包括基因本体）非常成功的一种格式。但它缺乏对其结构和工具（如DL推理机）的形式化计算定义，不利于本体的开发/维护。我们描述了OBO转换器，这是一个Java工具，用于将文件从OBO格式转换为网络本体语言（OWL）（反之亦然），它也可以用作Protégé Tab插件。它使用了由国家生物医学本体中心（NCBO）（OBO开发者和OWL专家的共同努力成果）提供的OBO到OWL的映射，并提供了便于以两种格式保存/读取文件的选项。